Array 1 205617-204921 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIMB01000001.1 Streptococcus suis strain SS997, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205616 36 100.0 30 .................................... TCAAGCCGTACGGTAAGTTTCTGGTGACCA 205550 36 100.0 30 .................................... GTGTGTAGATAATAGAAGAAATATCTGTTA 205484 36 100.0 30 .................................... TGCAACTGCCGACCAGACACAACAGGCTCT 205418 36 100.0 30 .................................... CTGACTCTAAAATGAGGGAAGAGCGATTGT 205352 36 100.0 30 .................................... AAATGTACCAGGGTATCGTCGAGGAGACCG 205286 36 100.0 30 .................................... GGTATTCTGAGGAATGGTCAAGCTACCATA 205220 36 100.0 30 .................................... CGCATTGTCCACTTGATAGACAATGATATT 205154 36 100.0 30 .................................... GTGAGTCAATACTATCATGACCGCTATACG 205088 36 100.0 30 .................................... GGCTTTTTTGATTTTCCGTCTGGTTAAATT 205022 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 204956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : CTGTGCTGTTTCGAATGGTTTCAAAACTAACAAAGGGGATTGGCATCGTTCATTAGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTATTGAGAATTTCAGCCTTATACCCAGTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCGTTCGAGATTGACCCGCTGATACCTTTTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTCAAGCCGTACGGTAAGTTTCTGGTGACCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTCTGGTTTCAAGTCAAATTCAGCTTGTATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 207181-205760 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIMB01000001.1 Streptococcus suis strain SS997, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 207180 36 100.0 30 .................................... GAGTAATATCGTCATGGATATCCAAGACAA 207114 36 100.0 30 .................................... TAAGGAACTCATGAATCAAGAATAAATCCT 207048 36 100.0 30 .................................... CCAATTTCTCCGCTTCTTGTTAATTGGTTT 206982 36 100.0 30 .................................... CAGTTGAGTGCGAGGGCTTGACGCTAGATG 206916 36 100.0 30 .................................... CAACGGTTGGCAACTTTCTCAAATGTTTTA 206850 36 100.0 30 .................................... ATGAAGTATCAAACCCATGTAATGGATTAT 206784 36 100.0 30 .................................... ATGTATAGAGCATTAAGGCTATCTCTCAAT 206718 36 100.0 30 .................................... AGCCTTTATGGATTCATCTAGCAGAAAGGT 206652 36 100.0 30 .................................... GACCTCATGTTTGAAAATGCTGACTATGTT 206586 36 100.0 30 .................................... TTGGCAATTAATTATGTAGGAGGACGATAA 206520 36 100.0 30 .................................... AGGACGGGCGGAAATGCTGACAAAGACCCT 206454 36 100.0 29 .................................... GACACAAATACATAAAGTGTATGTGAACT 206389 36 100.0 30 .................................... GATATATGCTTTAGCATTTTCTATTCGTCT 206323 36 100.0 30 .................................... AAGTTTTGGGGGAGATTATCAACGAACAAT 206257 36 100.0 30 .................................... CTATTTTTGGTATAAGAAACCTGTGAAATT 206191 36 100.0 30 .................................... ATGTTCTCGTTCAAACCGTGCGACATGTTT 206125 36 100.0 30 .................................... TAACAAAGGGGATTGGCATCGTTCATTAGA 206059 36 100.0 30 .................................... TATTGAGAATTTCAGCCTTATACCCAGTTA 205993 36 100.0 30 .................................... CGTTCGAGATTGACCCGCTGATACCTTTTG 205927 36 100.0 30 .................................... TCAAGCCGTACGGTAAGTTTCTGGTGACCA 205861 36 100.0 30 .................................... TCTGGTTTCAAGTCAAATTCAGCTTGTATG 205795 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTCAAGCCGTACGGTAAGTTTCTGGTGACCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACGTGTGTAGATAATAGAAGAAATATCTGTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTGCAACTGCCGACCAGACACAACAGGCTCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCTGACTCTAAAATGAGGGAAGAGCGATTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACAAATGTACCAGGGTATCGTCGAGGAGACCGGTTTTAGAGCTGTGCTGTTTCGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //