Array 1 202486-199346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAC01000001.1 Bifidobacterium pseudocatenulatum strain AF12-8LB-d AF12-8LB-d.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 202485 29 96.6 32 ............................A AGGTGGCTGAAATACGTCGTAATGGCGATAAA 202424 29 100.0 32 ............................. ACTGGGTATGGCGCAAAGAGAGCAACCCCGCT 202363 29 100.0 32 ............................. GTAGTAGCGATAAACCATGCCATACCACAACA 202302 29 100.0 32 ............................. ACCTGAAAACCATCATTAGTGATGATAAAATA 202241 29 100.0 32 ............................. TTGCATGTAGATCTCGGACTTCCGGTCAGTGT 202180 29 100.0 32 ............................. AAATGGATGACGAAACCACCGAGGAGAGGGAC 202119 29 100.0 32 ............................. TCTCGGTACAGACAATCACATCCCTTAGTTAT 202058 29 100.0 32 ............................. CGCCATTACTGGCCGCGATGGTACTGAGCGTA 201997 29 100.0 32 ............................. CCCAGCTAGAGTACGAAATCGGACGGCATACC 201936 29 100.0 32 ............................. ATCTCGACCAGCTCAGGGAACAGCTCGACAAT 201875 29 100.0 32 ............................. GTCCGGGTGAATATCGGTAAAAGAGGTGTCAG 201814 29 100.0 32 ............................. GCGGCGTGCTGGCGATCGTGAAGCTGGCAACG 201753 29 100.0 32 ............................. TGGCGAGGAAAACAAGTACCTCCTGCCGGACA 201692 29 100.0 32 ............................. GAACTCAAGGCGTCGCCAATGTCGGCCATGCC 201631 29 100.0 32 ............................. AGATATCAAGGGTGGAAGGATGATGGGGGCGT 201570 29 100.0 32 ............................. CGCCGATATCGAAGCGATCAAACAGCTTGTCG 201509 29 100.0 33 ............................. CATCCGACTCGCAAGGACAAGGGCACCCATCAA 201447 29 100.0 32 ............................. TTTACAGTGACGTTGGCCGCTCCTGCGCCGGT 201386 29 100.0 32 ............................. GTGTTTGAAAGCGCTTGTGAATTGGATGAAAC 201325 29 100.0 32 ............................. AACCAAGGGCACCCCGACACCGGACGGGGTGG 201264 29 100.0 32 ............................. ACGATACGTAGCACTCGCACCCGCAGACAAGT 201203 29 100.0 32 ............................. GCTTCCGTGCTCGCACCCCCCGCCGTGATCTT 201142 29 100.0 32 ............................. GCAGACCGGCGTAGCGAACACCATGCGATATC 201081 29 100.0 32 ............................. AAGGCGCGTGTCAGTTTGGATATGGCCGGACG 201020 29 100.0 32 ............................. GACTCCTGGGCGCGACGCTCCGTCTCTTGGGC 200959 29 100.0 32 ............................. AAACGTCGGCATGTGATAACTTCCCTTGAGCC 200898 29 100.0 32 ............................. CAATTGGACAAACGAGAACAGGACGGCAACCA 200837 29 96.6 33 ............................A TACGGTTGCGCGTTGTTTTTCGAGGACAAGCGT 200775 29 100.0 32 ............................. TTCCACGACAACCTGGATCGGCCAATCGTGGA 200714 29 100.0 32 ............................. ACTACGACCGTTATGGCCGGGACAAAGGCGAT 200653 29 100.0 32 ............................. GCGCCGCCGTTGTTGACCACGGAAAAGTGGGG 200592 29 100.0 32 ............................. AGGGGCAACGCGCCACTGCCCATCGACACCAG 200531 29 100.0 32 ............................. AGGCAGGAAAAATACGCGCCGCATACGCCGCA 200470 29 100.0 32 ............................. CATTCCCGCTGTGTCTCACGTGAACCAAACCG 200409 29 96.6 32 ............................T TATGCGACACGACTCGCCATCGCAGACCGCGC 200348 29 100.0 32 ............................. GGGTTAGGGGTAATGGAGCCCCTGTGCTTGTA 200287 29 100.0 32 ............................. GAGGAGCCACGCATCACCCCCCGTGACGTGCA 200226 29 100.0 32 ............................. GGGTTGATCTCCTTCGTGCCGAACGCCGCCGC 200165 29 100.0 32 ............................. TGGTGGCCCGCCGATTCGGATACGCTTTGAAC 200104 29 100.0 32 ............................. GTGCTGAGCGTACGGTATGTGGTCATAGTTGG 200043 29 100.0 32 ............................. CAGATCATCGCCATCTACACCAGCCAGGAAAA 199982 29 100.0 32 ............................. CATGCGAGCGAGTTAGCCGAATCTGGCTTGTC 199921 29 100.0 31 ............................. TCGGGAGAGGCGAAGAACGTGCTGATGGCGT 199861 29 100.0 32 ............................. AGTTCCATCGCCGTTTCCGGTGCTCGATGCTG 199800 29 100.0 32 ............................. TGCTGCTTCGGCGTCACCACTGGGGTAGTTGA 199739 29 96.6 32 ............................A CTTTGATGCCGACCGTGCAGGCCATGCTGCCG 199678 29 100.0 32 ............................. AGTAGAGTTTGCGCAGATTCCGATACCGGGCG 199617 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCACCCGGCT 199556 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 199374 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 50 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATGTATGGCAGGTGTACGTGCGAAAAGCGCCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGACATGTGCCATATATAAGCGAGAAACTTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTATATGTCCATAAATTTCGACGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //