Array 1 75716-75137 **** Predicted by CRISPRDetect 2.4 *** >NZ_NODA01000020.1 Escherichia coli strain MOD1-EC5776 MOD1-EC5776_20_length_94078_cov_39.2688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75715 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 75654 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 75593 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 75532 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 75471 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 75410 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 75349 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 75288 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 75226 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 75165 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92832-91217 **** Predicted by CRISPRDetect 2.4 *** >NZ_NODA01000020.1 Escherichia coli strain MOD1-EC5776 MOD1-EC5776_20_length_94078_cov_39.2688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92831 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 92770 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 92709 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 92648 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 92587 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 92526 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 92465 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 92404 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 92343 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 92282 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 92221 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 92160 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 92099 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 92038 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 91977 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 91916 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 91855 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 91794 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 91733 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 91672 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 91611 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 91550 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 91489 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 91428 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 91367 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 91306 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 91245 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //