Array 1 3980775-3984531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042434.1 Arachidicoccus ginsenosidivorans strain Gsoil 809 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3980775 30 100.0 35 .............................. CATCACCTTCAACAGTCAAAGACGGCTCAGGTTGA 3980840 30 100.0 36 .............................. ATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTAT 3980906 30 100.0 35 .............................. TGATTAAACCTGTTTTATCATCACGTTTAGAAAAA 3980971 30 100.0 36 .............................. ATAATAATCAAAACGATCAAACTTAGAAAACTTTTT 3981037 30 100.0 36 .............................. GTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTT 3981103 30 100.0 37 .............................. AAGAATCCGATTTGGAACAAAAAAATAATGAATAAAA 3981170 30 100.0 37 .............................. AAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTT 3981237 30 100.0 36 .............................. GATTGTAGTACACATACATTTGCAGCTCTTTGAGCC 3981303 30 100.0 37 .............................. TAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCC 3981370 30 100.0 35 .............................. GATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGA 3981435 30 100.0 37 .............................. TTATATAATTATCGCAGGGGAAAGGCGATACCGGGCG 3981502 30 100.0 35 .............................. ATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTC 3981567 30 100.0 35 .............................. AGCTGAAGGATATCAAGGATCCAATAGATATCCTT 3981632 30 100.0 35 .............................. TGAAATGGCTTTCAATGTCATTCAGGGTTACCAGA 3981697 30 100.0 37 .............................. AATCTAACGTACGAGGGTCCGGAAAATACTCATCAAA 3981764 30 100.0 36 .............................. CCTATTAGTACGGAAGAAATTCCGTTTGATGATGTG 3981830 30 100.0 36 .............................. GCGAGAGTAAAACGATCACCAGGAACACATTCAGTA 3981896 30 100.0 35 .............................. TTATTAAACCTGTTTTATCATCACGTTTAGAAAAA 3981961 30 100.0 36 .............................. TTGATATATATGCGGTAGCGGTTGTCCGCCGAAACA 3982027 30 96.7 35 .........A.................... TTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTA 3982092 30 100.0 37 .............................. GAATTGTATCTCGATAGTCTTTGTATGGTTGCATAAT 3982159 30 100.0 37 .............................. AGATTTTAAACATGAACAATTTCAAAGTAAAATTATC 3982226 30 100.0 37 .............................. TTAGGAGTACGACACCCAGGAACACAACACCTAAAAC 3982293 30 100.0 36 .............................. AGAAAAGCAGATAATGAAGTATGGTCATTTAAACCG 3982359 30 100.0 35 .............................. GTAATTTTAAGACAATTAAACCCTAAGGGCTCAGT 3982424 30 100.0 37 .............................. TTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGT 3982491 30 100.0 36 .............................. TGAGAAGGGCACAAAGAAAAACGACAAAAAGACCAC 3982557 30 100.0 35 .............................. TAAAAGGAAACCTCAACAGTCTTTGGACCAGAATC 3982622 30 100.0 37 .............................. TGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGG 3982689 30 100.0 38 .............................. ATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTG 3982757 30 100.0 36 .............................. ATCAAAAAGATTGTGATAATTGTATAAAATACTTTT 3982823 30 100.0 36 .............................. TTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCA 3982889 30 100.0 35 .............................. ACTGTTTTGGGGCACTATTGAAAACGAATAAAATC 3982954 30 100.0 35 .............................. GACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTC 3983019 30 100.0 36 .............................. ATGAAGAACTGGAGGAAATATTTGACTACGATAAAT 3983085 30 100.0 36 .............................. ATATTTCCTTTATACGATTCATCAGTTCAATATTAT 3983151 30 100.0 37 .............................. GTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTG 3983218 30 100.0 35 .............................. TGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTG 3983283 30 100.0 38 .............................. GGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATG 3983351 30 100.0 36 .............................. CTGGGGGACCCAGTACCATCGAGATGCACATTAGCA 3983417 30 100.0 36 .............................. GATTTATCAACCGTATGAGTACTTTTAATAATATGA 3983483 30 100.0 37 .............................. CTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAA 3983550 30 100.0 36 .............................. TCAAATACCGGATTGACTTCAAATACTCAATTTGTT 3983616 30 100.0 37 .............................. CTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAA 3983683 30 100.0 38 .............................. TGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAA 3983751 30 100.0 36 .............................. TAAAAACCTGGGAATTGGGGTACTGAAATTTCTACT 3983817 30 100.0 37 .............................. CATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTT 3983884 30 100.0 36 .............................. GATAACAGCTGGAATTGGCAAACACCTCTCCAGGGC 3983950 30 100.0 37 .............................. TAATAAATACCAATATCTTTTCATAATTTTTATTTTA 3984017 25 76.7 3 .............C.....G.....----- ACT Deletion [3984042] 3984045 30 100.0 36 .............................. GGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCA 3984111 30 100.0 36 .............................. AAATCTTAAAACTCTAAATTAAAAGATCATGACAAA 3984177 30 100.0 36 .............................. CCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCT 3984243 30 100.0 35 .............................. ATTGGTATTGTAAGTCTTTATAGCGAATAAATCAA 3984308 30 100.0 36 .............................. GCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGC 3984374 30 100.0 32 .............................. GTGTCTTTATTGTAGGGGATCTTTGTTTGGGG 3984436 30 100.0 37 .............................. AAGAGAAAATAAATTGCAGTGATCTTATAATAGTTCT 3984503 29 93.3 0 .........................-..T. | ========== ====== ====== ====== ============================== ====================================== ================== 58 30 99.4 36 GGCTTAATCGAACAATAGTTGAATTGAAAT # Left flank : TTAAAATTTGGTGGTAATATGTATGTGATTTTAGTTTATGATATTGGGGAAGAAAGGGTAGGAAAGATGCTCAAATTATGTCGACGTTATTTAAATTGGATTCAAAATAGTGTCTTTGAGGGTGAAATTTCCGAAGTAAAGCTTAAAGAATTGCAATTTCTTGCAAAATCCATCATGGTTCTATCATATGATAGTATTGTTATATTTAAAAGTAGAAATGAAAAATGGCTTCAAAAAGAGATTATTGGGAAGGAAAAGAATGAATTGGACATCTTTTTGTAGTTGTTGTAAATTGTCGATCTATTTGGAAAGAGTGGAATAATTAGTTCTTTGACATATTGGTTGTATATAAAGTATTGAAAGTTATTTAGATATGAAGTTGTCGATATTCGCTAAATTATAAGGTCATTGATTATCGACAACTTTTTATATAAAATTTTGTGTATATTTGTGCACAATAGCGCTGATAATCAGCGTTATTTAAAAGCCTAAATGACGGG # Right flank : TTTAATACCGGACTAAAACGATACCACTTGCCACCAAAAAACGATACCACCCTTCTGGACAGCTGACTACGGCAGTGTTCCAGAGCACACTTTCAGAAGCCATTCCGGTGTTTTTTTTTGATGCTCAATTTCCAACTTAAAACATGCAATCGTTTCTAATTGGGATACCTATGTTTTAATTGGACGATTATCAATCATTTAACTGTAGTGATATCTGATATTTTGCGTTGTGCTTTGCTCTTGCTTTCTTTTATTTGCCCGTATTTAGTCTCATTTGACACCTATTCATCGTGGGGCCGTTGGGGGGTGAGGGAGCCGGAGCGGAGCGGAGGCGAACGAGCCCCCAACGGGAAAGCGCATTTTAACCCCCTTTAACGGGTTCTGTTAGCCTCTAAACAGCCTGGGTAAGGCTATCAAAAGGGCAAGGTAAAGCGCCCTTTTGATGCTTATTGAAGGCTAGTAAGTATAGCCAAAGTAGGAGTCTAACCACTACAGTTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTAATCGAACAATAGTTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 3985505-3986442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042434.1 Arachidicoccus ginsenosidivorans strain Gsoil 809 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3985505 30 100.0 37 .............................. CAATTTACCGTTGTCTGTCCTTTGGACTGCAAAGAGA 3985572 30 100.0 35 .............................. TAAATATAACGAGTGCTACCCAAAATACTATTTCA 3985637 30 96.7 19 .T............................ ACACTTTATATTAGTTTGT Deletion [3985686] 3985686 29 90.0 36 TC...-........................ ATCGTTTGACGGTATACTTTTCTCCGCCCAGATAGA 3985751 30 100.0 36 .............................. TGTTTTTAAGGCTTAATTCCTTGACGGCGGCAAATA 3985817 30 100.0 36 .............................. TTGCAATAGTTTGCTTTCACTTTCAGGCTGTATCAT 3985883 30 100.0 36 .............................. TACGTTCGTATACACTATTTTTAGAAGCAGCCAACA 3985949 30 100.0 36 .............................. CTATTTAAAATAGAAACAATGAATAAGAATGCAAAA 3986015 30 100.0 37 .............................. TTTCCTGCGAACTTTTGCGCATAACCCGCTATCTGTA 3986082 30 100.0 37 .............................. GTCGTTTTCTTCAATTCCATACCGGAAAGTGTTTATG 3986149 30 100.0 35 .............................. CCCAATCAACGCAGGTAAAGGCATCTGAATTTAAT 3986214 30 100.0 36 .............................. CCAGAAGTCACCCAGGATCAACAGAGCGCCGTAGCG 3986280 30 100.0 37 .............................. AATATACCGGACAAAAAGACGATTTCGGTAACGAAAT 3986347 30 100.0 36 .............................. CCTATTAGCCGGCTGGATCTTTTGCAGGCAGTGGGC 3986413 30 83.3 0 A.T...........G......T..A..... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.0 35 GGCTTAATCGAACAATAGTTGAATTGAAAT # Left flank : GTAGGAGTCTAACCACTACAGTTACAGCCAAGCTTATAAATAACGTTGGCATCTTCAGGTGGAACAATACCTGATACATTATAAATATGATAATATGTATATATCAGATAAGCTGCTGATTACTCGTTATTACATATAATTATGATATATATGTTTGCTTTAAATTATGCCAAATTATTGGGATGTGAAGCTGTAGAATGGCACACGTTATATATAACAAACAAATAAATATATATGAAATATATCTAGCTGTTCGATTTTTAAAAATCGAACATATCTGTTATTAATGCTTGTTGCATGCGGCAACTATTGTTAATAAATTCCAAAGATGAAAAGCAGTAATAAAGATAAAGATTCTTCATTTAATCCCAAATAATTTTTGCAAAATTATTGGAGATTACTAAGTGGTACCGTTTTTCACCGTTAGGTGGTATCATTTTATACCGCTGTTAAAAAATTGAAATTTGGAGGGCTAATGTATAACCCTGCTCTATATTTAA # Right flank : TTTTGAGGTTGATTTGAATAATTTATATCCTATAATTTATATTATGTTAAATAGAAAGAAGATCAAAATTAATCTCCTGTTGTTAATACTAAATGAGGTATAAGAATTGTTTCAATAGTATTCTGTTTGTTGCTCGGCTATCCTATCCTTTCACAAACTCAAGCTTATGAAAGGATTAATATCGTCCAGCTTGCCAGGCTGCGAGGTGTTTCTTTCCGATGATACAACTTTAAGTGTGTAGCGATTTAATCGAAAATCGCGTTATGTTATAAGGGCAATATTGACCTTATGATGAACAATAAACCAATTCATATGCAAATTAAAAAATTACTCTCGATATTAGTCGTTTTAGTGATTACTGGCACCTGCTTTGGACAAGTCCGTTGGGCAGTAAAAGCCGGACTAAATTACTCAAATATAAGCGCTGAAGATAAGGATGAAGTTAAGGCAAACACTAAATCTGTTCCAGGTATTTATTTAGGTTTAGGAGCTGATATTGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTAATCGAACAATAGTTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //