Array 1 5851-3951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLD010000006.1 Listeria welshimeri strain FSL W9-0484 NODE_6_length_193950_cov_79.185384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5850 29 100.0 36 ............................. TTAATCCTCACTGGCGTTGCAGTAAATCCAACAACC 5785 29 100.0 36 ............................. TAGTAACCATCCTTTTTATTTATATTTTTTATTAAA 5720 29 100.0 35 ............................. CTTTTCTCCAGGTTTCCGGTTCTAATGCTGCAAAC 5656 29 100.0 36 ............................. CAGCTCTTTATTTACTTCACGTGTTGCTTCACAAAC 5591 29 100.0 35 ............................. TTTTAAAAGGGATTCTAACACCTCATTACTTTCTT 5527 29 100.0 35 ............................. GAGTCAAAGTGGCTGAAAATTATGGAGAAGAAGAA 5463 29 100.0 34 ............................. AACAACAGATTTAAACGGTGCAGCAAGCTTCACA 5400 29 100.0 35 ............................. CTGCTCACATAATGATAAAAGATGTACTCACCTTT 5336 29 100.0 35 ............................. TTGTTTGCCTCCCATTTATTATTATTAGTAATACA 5272 29 100.0 36 ............................. ACTACAGGTGACAGCTCTTTAGATTTATTGCTTTAT 5207 29 96.6 38 ........................C.... GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 5140 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 5075 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 5012 29 100.0 37 ............................. ATCATGGGAGGGGATATCTATATTAGATCTACAAACT 4946 29 100.0 34 ............................. CTATTGCCAAAAATGGACTTTAAATCAAATCCTG 4883 29 100.0 35 ............................. TTTATACATCGCGATGGACAAAAGCTGGCAGAGCA 4819 29 100.0 36 ............................. TCGTACAGCGGAAAACTTGAAACGACTGGGAATATT 4754 29 100.0 36 ............................. ATTTACAAGACTCTCTCTCTCAAAGAGAAATCGAAC 4689 29 100.0 34 ............................. TTGTTTTAATTTTTTTAATTCGTCTGGAATTTGT 4626 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 4562 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 4499 29 100.0 34 ............................. AGTGGAACTGGATGAAATTGTAAAGAATCGCTTA 4436 29 100.0 36 ............................. GGTCATGTACTCATCGAAACAGAGGGCGCCCAGTTA 4371 29 100.0 38 ............................. ACTTTGCGTGCTTTTACAAACATAATTAATCCTCTCCT 4304 29 100.0 36 ............................. AGCGTTGAAAGTTGCTCTTGGCTCAGCAGCAGCTGC 4239 29 96.6 36 ........................C.... GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 4174 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 4108 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 4044 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 3979 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTAAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTAACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6051-5420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLD010000019.1 Listeria welshimeri strain FSL W9-0484 NODE_19_length_35516_cov_85.795169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6050 36 100.0 30 .................................... AGGGCGAAAGACGTTTGCAAAGCTCATATA 5984 36 100.0 31 .................................... TAAAAGGTCTAGGGAATATTGCAAAAAGCAC 5917 36 100.0 30 .................................... TAACTATGTAACCAGTTCGCGGCCGCGGGT 5851 36 100.0 30 .................................... AGTAAGATTCTACGTTTCTACTAGTATGCA 5785 36 100.0 30 .................................... CTTTAATTATTTTTCATATGCTTATCTAGG 5719 36 100.0 30 .................................... TATTCTGTCTGAAAACTGACTAGTTACATG 5653 36 100.0 30 .................................... TATTTTTTTGGTTTTACAACCTGTTTTTTT 5587 36 100.0 30 .................................... TAGTTCTTTAGATTTACTACTTTATGGTTT 5521 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5458 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5423,5426,5431] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACTCAGTATTACTATCTTACTTCGAAGTCGCTTTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //