Array 1 58915-62290 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKIL01000008.1 Neisseria chenwenguii strain 10010 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 58915 33 100.0 34 ................................. TCACCTCAAAAAGCCCCTTGCGGGGCTTGATCGA 58982 33 100.0 33 ................................. AAATCCGCGCTTGTCGGTGATGCTCAGGCTGAT 59048 33 100.0 34 ................................. ATCGGTCGGCACAATGCGGCGCAACTCGCGCCAA 59115 33 100.0 34 ................................. CATCTTGGCCCAAAGGCGTTAAATATGCGTCCGT 59182 33 100.0 33 ................................. ATGCCCATCGACAACCACGATTGCGCCGACTTG 59248 33 100.0 34 ................................. TGCGGACTTTGACCGCCCATCACTAAAACCTGCC 59315 33 100.0 34 ................................. ATCAAATCTGAAATCATTTTGAGGGTTTTGCCCG 59382 33 100.0 34 ................................. AAAGTTGCGTCATGAAGCTATGATTGAAGAAGGA 59449 33 100.0 35 ................................. TTTCGACACTCGGATGCCATCAACATAATAACGGC 59517 33 100.0 34 ................................. AAACAACTTGTGGCGGACAAAGGAAACCACATCG 59584 33 100.0 33 ................................. TTGGTAAGTTGATTTAAAAAAAACTTAAGCCGT 59650 33 100.0 34 ................................. AATACATCGCAGCTTATCGTGTCTGGACACTTGG 59717 33 100.0 34 ................................. CTATCTATTACCAATGCTTAATTATAACCGCTTG 59784 33 100.0 33 ................................. AGAATAAAACGCACAAACGAAATCGCCGACGTT 59850 33 100.0 33 ................................. AGATGAGCGGCATCACTATCTTTTAGAGATGCT 59916 33 100.0 34 ................................. CCTCCGACGCGCTGCGCCCAACGCACAAGGCTTT 59983 33 100.0 35 ................................. ATTGATTCGACATGGTTGTCTATGGTACGCAAGTA 60051 33 100.0 34 ................................. TGTTCGGGCGGTGAAAATGTCCGATTGCTGTTCG 60118 33 100.0 34 ................................. AAAATAACGGTATTTATTACGGTATTTTTATCAA 60185 33 100.0 34 ................................. ATTTTTATTCTTCTCTTGGTTATTTCGGCTAAAG 60252 33 100.0 33 ................................. TAATCTGTATAATACTAAACATGGGTAAACAAC 60318 33 100.0 34 ................................. TAATAAGTAAATTACCAAAAGATGTAAGCCCTAA 60385 33 100.0 35 ................................. AATTTATAAATGTAGGTTTCCATTTTTATAATCTC 60453 33 100.0 34 ................................. TAATAAGTAAATTACCAAAAGATGTAACCCCTAA 60520 33 100.0 34 ................................. AAATACTTGATAAATTTTCATAAAAAAAAACTCC 60587 33 100.0 34 ................................. AATAGTATGTTTTTTGATTGCCACCGAATGCTGG 60654 33 100.0 33 ................................. AACACATGCGCGACAAGTTCGGAGACGGTTTGT 60720 33 100.0 34 ................................. TTGGTAAGTTGATTAAAAAAAACGCGGTTGTGAC 60787 33 100.0 33 ................................. GATGCAACTCGTTGAAATTTTTCAGAAAATTTA 60853 33 100.0 34 ................................. CGCGTTGGCCAGCTTAATCACGTTTTCCGCGCGC 60920 33 100.0 34 ................................. AGATGAGCGGCATCACTATCTCTTAGAGATGCTG 60987 33 100.0 35 ................................. GAGAGTCGAAGCCTACAACGTTACAACGGTAACGT 61055 33 100.0 35 ................................. CTCCATATCTACGGCGATACCGCCCACTACCCGGG 61123 33 100.0 34 ................................. CCTGCTCTATCGCCCGTTGTGCCTCTTCCGCCGC 61190 33 100.0 32 ................................. AGTTCGGTAACGGCGGACGCATTGCCCGACTG 61255 33 97.0 33 T................................ TTTTTGACATTTTTATTTACCTATACAAAAAAG 61321 33 100.0 34 ................................. ATAAAAAAGGATAAAGAAAAATGAAACGTTCAAA 61388 33 100.0 33 ................................. TTGCGGAACCTGATGAATGGTGACTTTGGTGCC 61454 33 100.0 33 ................................. GGTCACGCTCGGGCGGCCTGTGGACTCGCTGCC 61520 33 100.0 34 ................................. CGCGCTCGGCACCATCAGCGCAATGATGACGCAG 61587 33 100.0 35 ................................. AGATCGTAGGCGCGTCGATATGATTATCGCCAAGC CT [61608] 61657 33 100.0 34 ................................. GCCCGAAGTCGTCTGCTCTGATTCGGATTCCGCC 61724 33 100.0 34 ................................. CCCATACGACAACGACACAGACGGCGGTGCGGCA 61791 33 100.0 34 ................................. TACAAAACCCATCCCGACTACAACACCCAGCGCA 61858 33 100.0 33 ................................. GAAAACGGCGTTCCTGTGTTTGACGAAAACGGC 61924 33 100.0 34 ................................. AGATGACTGCCCTGCAAAGACGTTCCCAAAGCGC 61991 33 100.0 34 ................................. TCGCCATATTTGCCCGTTACGGTTACGCTTTTGT 62058 33 100.0 34 ................................. CAGCAAGAGCTATAGCGACCTACGCTGTCTTGCC 62125 33 100.0 33 ................................. ACCAAGCTTGTTGACGAATACAACTTTACCGCC 62191 33 97.0 33 .................A............... ACAAAAAGATAGATCCAACTGTTCATAAAAGCT 62257 33 84.8 0 .....................C...G.CA...T | G [62274] ========== ====== ====== ====== ================================= =================================== ================== 51 33 99.6 34 CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC # Left flank : AAAACAGGGGGAAACATTGTGCTGATGTTGATTACTTACGATATTTCGCTGGACGACCGCGAGGGCGCCACCCGCCTGCGCCGTGTGGCGAAAATCTGCCAAGATTATGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTGAAAAGGAAATTACTCGATGCTTACGAGCCAAAAACCGACAGCCTGCGCTTTTATCACTTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCAAAACCGGCGGTGGATATTTTCGGCGATACGCTGATTGTCTAGCGCCAACCTGTGGTGCGCATGAAAATGCGGGGAGGTTGGCGCGGGCGGATTGTTCTTTAACAATCAGGATATTAGACGGCGGGTGTGCACGAACGGGGGCTGTGTTATACTTGCCGCACGGCTTTTTTCGGAAGCTTGGCGAATCGGGGCTTTGTAAGTCTTGATTGGCTGTGCTTTCGGAAGATGCC # Right flank : TTGAAAACCTATTTTCCCAACCCATAAACAACGAATACGAAAATTTTCTAACATTTTTTCCAATATTCAAGCAGACAACTTTTTTCAGACGGCCTTTGTCCACTTTAATTGATAAGAAAACCACCCTACCCCACACGGTAAAACGCCAGACTTCCGAGCAGGTTGGGCAGGTATTTCACCTGTTTGCTGCCGGCCATGACGGCACGTTCGTGGATGCGGATTTTGTTTTTGGCGCAGAGCAGATCGAAATCTTTCAGGGTACACCAATGGATGTTGGGGGTGTTGTACCAATGGTAGGGCATGCGCTCGGAAACGGGCATGTGGCCGCCGAAACCGATTTGCAGACGGTTTCGCCAGTAGCCGAAGTTGGGGAAGCTGACGATGGCCTGGGTGGCGACGCGCATCAGTCCTTTTAAAATCAGCTCGGTATTCTGCATGGCTTGGATGGTTTGGCTTAAGACGATGACGTCGAAGCTGTGATCGCCGAAGGCTTCGAGACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //