Array 1 212-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDY01000121.1 Acinetobacter baumannii strain ABBL044 contig-38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 211 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 151 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 91 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : T # Right flank : AATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1049-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDY01000042.1 Acinetobacter baumannii strain ABBL044 contig-1000071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1048 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 988 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 928 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 868 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 808 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 748 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 688 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 628 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 568 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 508 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 448 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 388 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 328 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 268 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 208 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 148 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 88 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-443 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDY01000003.1 Acinetobacter baumannii strain ABBL044 contig-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 61 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 121 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 181 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 241 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 296 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 356 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 417 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 689-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDY01000081.1 Acinetobacter baumannii strain ABBL044 contig-2000059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 688 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 628 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 568 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 508 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 448 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 388 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 328 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 268 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 208 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 148 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 88 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48801-45532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDY01000051.1 Acinetobacter baumannii strain ABBL044 contig-16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 48800 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 48740 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 48680 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 48620 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 48560 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 48500 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 48440 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 48380 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 48320 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 48260 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 48200 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 48140 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 48080 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 48020 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 47960 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 47900 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 47840 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 47780 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 47720 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 47660 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 47600 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 47540 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 47480 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 47420 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 47360 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 47300 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 47240 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 47180 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 47120 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 47060 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 47000 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46940 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46880 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46820 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46760 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46700 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46640 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 46580 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 46520 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 46460 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 46400 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 46340 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 46280 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 46220 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 46160 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 46100 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 46040 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45980 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45920 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45860 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45800 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45740 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45680 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 45620 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 45560 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 55 29 95.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //