Array 1 4614279-4615588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010117.1 Escherichia coli strain C2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4614279 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 4614340 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 4614401 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 4614462 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 4614523 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 4614584 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 4614645 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4614706 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4614767 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4614828 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 4614889 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 4614950 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 4615011 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 4615072 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 4615133 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4615194 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4615255 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4615316 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4615377 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4615438 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4615499 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4615560 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4641288-4642352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010117.1 Escherichia coli strain C2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4641288 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 4641349 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 4641410 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 4641471 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 4641532 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4641593 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 4641654 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4641715 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 4641776 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 4641837 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 4641898 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 4641959 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 4642020 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4642080 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 4642141 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 4642202 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 4642263 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4642324 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //