Array 1 934886-932514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 934885 28 100.0 33 ............................ TATATATTTCATCTTTCACCTCAGAAAATATAA 934824 28 100.0 33 ............................ CAACAAGTGAATTTTGAGTTAGCTAAACAGGCA 934763 28 100.0 33 ............................ TGGGAGTGGAAAGGCGAAAAATTTTACTGTAAA 934702 28 100.0 33 ............................ CATGTAAGGCTACCGATATAGCAAGAAGTCACT 934641 28 100.0 33 ............................ GTATGTATGAAAAAAGACAAAAAGCCTACCAAT 934578 28 100.0 5 ............................ GGGGG Deletion [934546] 934558 28 89.3 33 TG..C....................... TTTCAAAGCGCGTGGGGAATCTTTCCCACCTCA 934497 28 100.0 33 ............................ ATGTTGTTTGATAAGCCTGAGATGGGTGAACAG 934436 28 100.0 33 ............................ TTTCCCCATCTTCTGTGAAAACATCAACCGTGA 934375 28 100.0 33 ............................ TATTAGGGTTATTAACGCGAATTACCCTAAGAA 934314 28 100.0 33 ............................ TTCCTCAACGCTACTCCAACCCATTTCTTTTAA 934253 28 100.0 33 ............................ TGAAGGAGCTAATTGATAAGGATGTGATATAGA 934192 28 100.0 33 ............................ TAAAAGTAAAAACAGTAGTGTAGAAGTGCTAAT 934131 28 100.0 33 ............................ TTAACAAAATGACCAATGCAAAGAAGATTAAAG 934070 28 100.0 33 ............................ TGGATTGAGATTGATGGGATAGGCTACAGGATT 934009 28 100.0 33 ............................ CAATTAACCCGAAATGGGAAGTTGACGAAGATG 933948 28 100.0 33 ............................ TGATTTAACTATAGAAAGATATGATATACTACC 933887 28 100.0 33 ............................ TTTAATGGTGCTATGGTAGAAGCACCCGGATTA 933826 28 100.0 33 ............................ TAGAACGCCAGTTTTAGGTGAAGGAGTAAAGAT 933765 28 100.0 34 ............................ CCGCGAAGGATAGTCAAATAAATTTAGAGAAATA 933703 28 100.0 33 ............................ TATTTACCGACAGTTGCAAGGAAGAAAAAAGCG 933642 28 100.0 33 ............................ TATGTTCAAGAGGTTGGGAGCTATACGGAAATA 933581 28 100.0 33 ............................ CAATAAATGTGCTTATTGTGGTGAAAGTAAACC 933520 28 100.0 33 ............................ TAACAATTGTTCTAACTTGATATTCTTCATAAT 933459 28 100.0 33 ............................ TGTGGCTTTAAAATGGTAGGTAAAAACGGAGGA 933398 28 100.0 33 ............................ TAATTGGGTAAATCCAACTACTGATACTTATAT 933337 28 100.0 33 ............................ TTATTTAGATGAATTTATTGAAGTTTATCAATT 933276 28 100.0 33 ............................ TGACGGAGTAAGTGAATTAAGGTTTCAAGGAAA 933215 28 100.0 35 ............................ TATCTATATAACAGAATCATCAAAAATTCTAAAAT 933152 28 100.0 33 ............................ TGTAATAACAGCTGATTTATTGTTGCAAATAGC 933091 28 100.0 33 ............................ TGATATTATTAGATAATATCAAAAATACTAGAT 933030 28 100.0 33 ............................ CTCTTTTATCAAGTATTTTCTTTGCACCACTAA 932969 28 100.0 33 ............................ TGAACTCAAACCATATACCGGAGATGAATGCCC 932908 28 100.0 33 ............................ TAACGAATTTATAAATAAAATTATACACGGTGA 932847 28 100.0 33 ............................ TGAATATATGATGATTAGAGGAAAGATATATAG 932786 28 100.0 33 ............................ TATTGATGCTATTATGGCTTATAAAATAGCTAT 932725 28 100.0 33 ............................ TAACAAGCTAAGAGATTTGAGATGTTTTTTAAA 932664 28 100.0 33 ............................ CATCATAGGCAGGGATTATATGAAAGAAAAAGG 932603 28 92.9 33 ..........................TA AACAGGAGGAAGAAAGACGAAACAGACTTTATG 932542 28 100.0 0 ............................ | T [932516] ========== ====== ====== ====== ============================ =================================== ================== 40 28 99.6 32 ATATTCCCCGCACATGCGGGGGTGATCC # Left flank : GCAGAACATGAAATTATTGAAATAGGAGCTCTCAAAATAAAAGATGGACAAGTAGAAGCGACATTTCAAGCCTTGGTAAAGTCAAAAGGTAGCGTGCCAAAATCTATTGAGGTATTAACAGGTATTTCTGATATAATGCTTGAAGAGAAAGGCAAAGAATTGGAAGAAGTTTTACCAGAATTTTTAGAATTTGCAGGGAATATGCCAGTTGTTTCCCATAATGGAGATTTTGATTACAGTTTCTTGAGAGCTGCCTGTCAACAGCTTGATATACCGTTATTTTCCAACAGATGTTTGGACACTTTAAAGATTGCAAGACGTTTGGTAGATGATGTGAAAAACTATAAGCTATCAACACTGTTAAAATACTTTGGGATTGAGGTACAAACTATGCATCGTAGCATTGAAGACTGTAAAATTACATTTCAACTCTATGAAAAACTCATTGAATTAGAGAAAGAACAAAAGTAGAAATGCCTTATTATCAACGTTATTTTAGT # Right flank : TAAAACCTCCAAAACCATACACTGTAGATTTTCAAATTAAACTAGGTGCAATAGTAGGTATTTTTCAAACTACAGCAGCATTATATGTGACCTTAATTACAAAGATAAATTAAATAAGCCATATAAAAATTTGAAAAGAGCAAGTTTAGCTGCCCATTTCAAAAAAAAGTTATTCTTATGATTTTTAAGTAAATCTATTTAACTAGCAATATATAATTAAAAGTAAAAAATTCTTTAGCTAACAGCTTTATTTAATATAATAATATTGAATTTTTACAACAATTTTCAAACCACTTTTACTTATTCACTATACCTCAAAATCCTTTTGACCTTGGTATGTAATTTCTTCATCAATTTCATGTATTTTTTTAGAACATGCATACATAAGACTAGCAGTAGCAAGGTTATTGCATGAATACTTCAAAAAAGTTATATTTGTTTTTAATATAACTAAGCTAATAGAATATATTGATCGAATAAACAAAAAACAATCTATCGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1200744-1200384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1200743 30 100.0 35 .............................. TCTAGCAACATCAGCTCGTGAAGTAGCTAGATATA 1200678 30 100.0 36 .............................. TACACATGGATAATGAAGAAAGAATAGAGTTTGAAT 1200612 30 100.0 35 .............................. CATTTAGCACAGGTTTTAGATGTTATTACTTTGTA 1200547 30 100.0 37 .............................. AAAAATAAAATACTTAAATTCAATGAACCGTGGAATA 1200480 30 100.0 37 .............................. TTGTTTCCCTCCTTAACTGGCTTTACTACATTTCTTT 1200413 30 83.3 0 .....................G...AGCC. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : GTATTACTAAGCAAAGCAGAGAATGATGAGCAAAAAAAACAAAATACAAATAAACCTAATATAATTAATCAAAAAAGTAATACACCTATTAAAAAATCTATTGATGAGGAACTCTATTTAGAATCAGATTATTGGGAACAAGAGCATTGCGAAGAAGAATACCATGATGAAGAATTAGACGATTTAATTAAAGAGCTAAACTCAGATGAAAATTACAACTATTATCATGGAGATGATGACTGGGCTGACATAAGTGATGAAGATGATTATTTTAAATAAATGAAAACTAGTTTGTCTGATGAAGCAGATATTTCAAAATGTATTAATATATAACTCATAAAATTTGTCGTCGACCTCCAGTAGTGTAAAAAACCTCAGGGGTCGACGACAAATAAAAATCTTGTAATATAGGGCTTTACAAAGAAAAATATAAATATTAGAATAAATTAACATGGAAAAGCAAAAATGCTAAAACCATGTATTCTTCTTCACCCTAGTGG # Right flank : CTTTTAGAGGGATTTACATCAAAATATTAGTTTGCTTAAGATGAAAGTTTTGAGTATGAATTTATTAAGCTGAAGATATTAAATCTCAGCTTTTTCTTTTTCTGGTTTATCCTTCCATAAAAATTGGCTAATATTGTATAATGGTGTTAATTACCCAAAGGAGATTAGTGTAATGAATAATAGTTGTGTATTTTGCGATACAGAAGAAAAATTTTTAGAAAATGATTTAGCTTTTGCTATATATGATAAATACCCAGTTAATCCTGGTCACATGCTAATAATTCCTAAAAGACATGTTGCTGATTACTTTGATACTACAATAGAAGAAAGACAGGCTATAGATAAACTAATTATGGAAAGTAGAAAACTACTAGATGAAAAATATAAACCTGATGCATATAACATTGGAATTAATTGTGGCGAAGATGCAGGACAAACTATTTTTCATGTACACGTACACTTAATTCCAAGGTATAAAGGAGATTTAGATAATCCTACTG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1204039-1203679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1204038 30 100.0 35 .............................. TCATCCAAGGGGGGATGTGAAAAAAACTTGGACAA 1203973 30 100.0 35 .............................. TAACGTTTCAAGTATTTTATAGCTGCTTTCTCCTG 1203908 30 100.0 37 .............................. AGGTTGGCTTTAAATCGAGAACAAATGGAGTACAATC 1203841 30 100.0 34 .............................. CTATCATGTTACAGCAAGCACGATTGACAAAAGC 1203777 30 96.7 38 .............................T CCCAGTGGGGCATCGAACATTAATTGGGCTTGACTATA 1203709 30 83.3 0 T.......TT..............A..C.. | G [1203687] ========== ====== ====== ====== ============================== ====================================== ================== 6 30 96.7 36 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : ACTAAACTGATTCTTAATAATCCAAATTATAGTGGTGAAGGCTATTTAATTGAAAAATACCGTGATAAATATAATGATCTATTAAATGAGCTAGTAAAAACAAACTCAAAGGATATAGAAATACTCGATTTCTGGAAACAATTAAAAGAACTGCGTAATGATATAACCCACTGTGGCTATAGAGAAAATCCATTTCTAGCTTCTTTAGATAAACAAGAAGAAATAAAAGAGTTACAAAAAAGATTTAATAATATAATATTTGAAAAAAACACAGACGATTGGAATAGTTTTTTAATTCTGCTGAACAAAGCTGAAAATGATATGCAGTTAAAATAGCATTATTTTTGTCGTCGACCTCCAGTAGTGTAAAAAACCCCGGGGGTCGACGACAAATAAAAATCTTATAATATAGGCTTTACAAAGAAAAATATAAATATTAGAATAAATTAACATGGAAAAGCAAATATGCTAAAACCATGTATTTTTCTACACCCTAGTGG # Right flank : TTTAAAAAGGGGGGTACAGATTGATACCCCCCCTCTATTCCTATGAAGCTTTTCTTTAAAACCTATCTAAATATCTTTATTTTCTAATTTGACAATCTTACTCATTCTCAAAAAATAAATCCTCCTTCGTAATAGATATGTCCTTTAAAAAGAAGCAAAACAAACGTATTATTAATATAGATTTTGAAAGAGATGAAAAAAATACTACCGTTAAATGTAACAACAAAAATTATGAAAGGATGTGAGAAAAAGATGTCAATAATATTAATGTTTATACATGCAATTAAAATAATATAAGGTTTAACTAAAAATAAGAAAGGAAGTGCAATATGGAAGTTTTTAACAACAATATAATGAACAAACAAATTAAAAAATTACTGTAGCCCGGCTGTTCAGTTTACAAACTAACAGACCGGGATTTTTTTATATTATAAATATATAGAAGGTTTTTAGTAATTTTTGGAGTATTAAACTAAAAAAAGAGAAGAGTTTATCACATG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1217789-1216705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1217788 30 100.0 37 .............................. GACCAATAGTAGAAAAATGATTAGCCCAATAAACCCC 1217721 30 100.0 37 .............................. AAATATATAGCTAAAGACATAGATAAATCAGTGAAAG 1217654 30 100.0 37 .............................. GACGAAAACGGAGAAGTTTACCTTGACCAAGATAGGT 1217587 30 100.0 35 .............................. ATCTATATTCTGCGGTTGCTTCTCCCGTTTTGTAA 1217522 30 100.0 35 .............................. TTCCTCCTATCCTCGCACTTTTTTAAGTGCTAAAA 1217457 30 100.0 34 .............................. TCAGTGCTCTTTACTATTTCAAATTGCGCGCCAG 1217393 30 100.0 36 .............................. CAAAATCTTGATGTGCTCCTATGTCACCTGTATTAT 1217327 30 100.0 36 .............................. TACCAGAACTACATTCGGATCAACAAGCATGGCATA 1217261 30 100.0 36 .............................. CCCAATTTATTAATTTCATTAAAATCATCCTTTCAT 1217195 30 100.0 35 .............................. ATAATCCGTGCTGCAAGAGTTACCTCACAGCACGT 1217130 30 100.0 36 .............................. TCTTTGCCCACTCAGGAACTCTTTGAATGGGTTGGT 1217064 30 100.0 35 .............................. TTTGAAGTGCTATTAAATGCCCTTGTAGTTTTCCG 1216999 30 100.0 37 .............................. TTAATTCTCTTTTGCCAATTTTAACTACTTGTTTTAA 1216932 30 100.0 37 .............................. TTATAAATGGTTACGTGAGAAAAAGGTTGTACCAACG 1216865 30 100.0 36 .............................. GACTCATAATCCAGTAGAGAACGGAAACCAAGCAAC 1216799 30 100.0 35 .............................. TACGTTTCGGCATCAATTTCGAACTCGTCTCCTTC 1216734 30 90.0 0 .........................T.T.T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.4 36 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : ATGGAATTATACAAATTAGAAAAACATTTGATGGGCGAAAAAGATTTTACCCCATTTGTTTCAAGGTGGTGATATTATTTTTGTAATAATGGTATATGATGTAGGGCAAAAAAGAGTAAATAAAGTTTTAAAAACTTCACGCAAATATTTATACTGGGTCCAAAACTCTGTTTTAGAAGGAAATATCAATGAAAGCAGTTTTAAAAAATTAAAAATAGAATTAGCAAAAATAATTGATAAATAATATGATTCAGTAATATTTTATACCTTTAGAACAACAAAATACTCAGAACGGCAAATAATGGGAGTAGAAAAAGGAGGAGAAGACAACTTCCTCTAAAATTTGTCGTCGACCTCCAGTAGTGTAAAAAAACCCGGGGGTCGACGACAAATAAAAATCTTATAATATAGGGCTTTACAAAGAAAAATATAAATATTAGAATAAATTAACATGGAAAAGCAAAAATGCTAAAACCATGTATTTTTCTACACCCTAGTGG # Right flank : TAATGTCATGTCTAATACCAATATTTTCAACAACTTTTTATACTTCTCATATTAAAAAATCTCCTTCGTAATAGTTGTGTCCTTTTCTATAAAAATAAAAAAAATTATTATAGATATAACATAAAAATAAAGGATGCAAGCACTCATTAAAAATAATTTTATTCTTTCAATTAAATACAACCCCATGTTTTTTAAGTAGCCTACCCATCAGGTCTTATTTTTTCTGTTTATTAAAAAATGAAAGGAGCAAACTATGAGATTTGAAGATAATAATCTGGAAAAAACTAATTTATATAGGATTCTAAATAGGAAAGAACAAATTAGGGACATTTGGCTAAAAGAAGTATCAGAAAACTATCAAACAAAAAATGCCTATATTAAAGCACCTTTTATTACTATAGATAAAAAATGGTCTGAGCATATTTGGGTATTAATAGATGAAATAGATTATAAAAGAGAATGTATTATTGGAAGATTAGCAAACATCCCTAAACTTATAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 1227246-1226947 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1227245 30 100.0 39 .............................. CCGAAATCCTCAAAGACTTCGAACACCCATTCATTATCA 1227176 30 100.0 37 .............................. TGAAATCAACATGATCTTCTTGTGCGTGCTCGTTAAT 1227109 30 100.0 39 .............................. TCCCGTTGTCTGGATCATAGAAATCTATAAACCCTTTGA 1227040 30 100.0 35 .............................. TTGGCTATATCCAACACAGGGAAGTCTGAAGGCCT 1226975 29 93.3 0 ...........................C-. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.7 38 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : GTTTTTATCACTACAAAATACTATAGATAATGACTTGACTAATAGTTGGATTTTAGAAACAGGATTAAACTGTGAAATACATATTCGTTTTTATCATGATGACATCAAAGGGAATAATAACTTTTTAAAAGAACGAGTTATAACTCAAGGCCGATGGGGAGAAATATATAATGAAAATGAAGGTTATTTTGATTATAAAATAACAGTTAATGGGTTTAGAGAAATAAAACCATGGATAAGAAGCTTTGGACATAGAGCAGAAGTCATAGCCCCTTCTAAACTGCGACAGGAGATAAAAGAAGAATTTAAGGAAATGATATATTTATTAAATAACTAATAATAAATGTCGTCGACCTACAGTGATGTAAAAAACCCCGGAGGTCGACGACAAATAAAAATCTTGTAATATAGGGCTTTACAAAGAAAAAGATAAATATTAGAATAAATTAACATGGAAAAGCAAAAATGCTAAAACCATGTATTTTTCTACCCTTCAGTGG # Right flank : TCTATTAAAAATATTTTAATAGAGGTTTTTTTATATTTCTGACTATCGTAATACTTTTGACCTATAAAACTTAGTCCTAAGATTATATACTCATATTTATAAAACAATGGCAGGATTTAGGGTGTATTTTGTAGAAACTTGGAAATATTAACCAAGGTAAAGAGGGTGATTTTTTGAGAATAAGTATCGAATTTAATTCTAAGCGTGACATTATATTACCTTTGCATTATAACTATTTTTTACAGGCATACCTTTACAACAATTTAAGTGATAAAGACTATAGTGCTTTTATCCATGAAAAAGGATATGAATTAGAACAGAAAAAATTTAAGCTTTTTACATTTTCACGTCTAATGGGGACATTTAGGATTAATCCCGAAAAAGGCATTATTAGTTTTAAATCACCAGTAAAATTAATTGTTTCTTCCGCAGTAGAGCAATTTATAACTGATTTAGCTGAAACTTTAATGCGTAAAGATGATAGTTGGTTAGGAAATAAC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 1229480-1228919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046457.1 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1229479 30 100.0 36 .............................. CTTCTTCAATAAACCAAACACTCTTTTGACTTAAGT 1229413 30 100.0 36 .............................. ATAAGAGGGTATATTCATATCCTCTTATTTTATTTG 1229347 30 100.0 37 .............................. TCACCCATACAGGACAACCCTTACAGACTAGGACTAT 1229280 30 100.0 35 .............................. GGAACTTCTTATATGTCGGCACAACCATACCTGCG 1229215 30 100.0 34 .............................. TATTTTCTGGAAAAGGGTGACATATTGAAGTTAG 1229151 30 100.0 38 .............................. CACTCATGGCATTTGTAATTGTCTTTGATGTACTCCTT 1229083 30 100.0 37 .............................. CCAATCGGACTAACTATCCTCGCTATAATGATCGGTG 1229016 30 100.0 38 .............................. CTTTTTCTTTATCAACTCAGGGTCCATGTAGAACCCAT 1228948 30 90.0 0 ...........................CCT | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 36 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : TAAAAGAATGTATTTAGATAAACAAAAGATTAACTAAAAATACAAGGATTGTTACCAAGCTTTGTTTAATAACTAATAACAAAGCTTGGTTGTTTTTGGAAATATCTACTTAAACAATACCCTTTTAAAAGAACGAGTAATCACACAAGATAGATGGGGGAGAAATATATAGAGAATGAAAATTATTTGGATTATAAAATAATAATTAATGGATTTAGAGAGATAAAACCATTAATTAGAAGCTTTGGGCACAGAGCAGAAGTTATAGCTCCTTTTAAACTTATGAAATGAAATAAAAGAAGAATTTAAGGAAATGATATATTTATTAAATTACTAATAATAATTGTCGTCGACCTCCAGTAGTGTAAAAAAACCCGGGGGTCGACGACAAATAAAAATCTTATAATATAGGGCTTTACAAAGAAAAAGATAAATATTAGAATAAATTAACATGGAAAAGCAAAAAAGCTAAAACCATGTATTTTTCTACCCTTCAGTGG # Right flank : CTATTAAGTTATTTTTAATAGAGGTTTTTTACTTTTCTGACTATCGTAATACTTTTGGACCTATAAAACTTAGTCCTATGATTATATACTCATATTTACAAAACACTGGCAGGATTTAGGGGTTTATTGTAGAATGGTGGAAATAATAACCAAAAAAAGTGGGTGAAAGTATGTGCCATTACCTAATTGGCGAAAAAAGGGAAGGGTTATATGTATGCCAGTAGAAAAATTTAAACTAGAAAAAGAGCTAATACGATTCCTATATTTATTTAGGGGAGGATTCAATAGAAAACAATTAGCTGATAGATTAGGAATATCTATTGATATGGTAGACAAAGCAATGTATCAAATAAGTGATGCAAAAAAAATGGATGAGGAAATAGCCATAGACATTAGAAATAGAGAAGTTTTTAAGGGGATATATAATGATTACTATAAAAATAGTCCTGTTTTTGTTCTTAGCCAGCTTTTTTGTTTGAAAAGTATAAAAGAAAAAGAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //