Array 1 82498-84066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000011.1 Cyanobacterium stanieri LEGE 03274 NODE_11_length_93591_cov_10.7123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 82498 37 100.0 34 ..................................... ACAGATTTTTAACAATGCTACCAGTGAGCAAGAA 82569 37 100.0 36 ..................................... TTCTGTTTCTATTCATGTGCTATAATCCTATGGTAT 82642 37 100.0 40 ..................................... TCTGCGGGGAACATCTTAATCGAAGCTGTAGATTATTTAG 82719 37 100.0 41 ..................................... ATTTTCTTTGTTTAATGGCGTACCACCGCCGTAAAAAAATT 82797 37 100.0 35 ..................................... CTTATCTTGTGAGAGGTAAACGAGCAACGGATAAT 82869 37 100.0 33 ..................................... TAATACTTGGTCTGATGATGCTATTGGTTGTTT 82939 37 100.0 35 ..................................... AGATCAGATATTAAAATCTATTTTTGCTACTAATG 83011 37 100.0 37 ..................................... AAGGCTGAAGCCTCTACCTGTGTCGCCTTGTTTAAAA 83085 37 100.0 35 ..................................... ATCGTGGGAAGCCCTAACACCTTTCAAATTTTCAC 83157 37 100.0 40 ..................................... AATAACAGGGAATGTTGCCCGGCACCGCCACGAGATCCAA 83234 37 100.0 36 ..................................... TCAAAATCGCGAGACACTCGATTTTTTCTAGGTACA 83307 37 100.0 36 ..................................... CCCAATACCGATTCACGAGATCCAATGGCATTTAAT 83380 37 100.0 31 ..................................... ATTCTAACCAATGGTTAAGCCTGAATGATAA 83448 37 100.0 36 ..................................... TTATGGGGTGGGTGTCTTCGGAGTTTCCTCAATGGA 83521 37 100.0 36 ..................................... AGCGGGTTCTTTTTCTGATGCTGACGAGGAAACAAA 83594 37 100.0 38 ..................................... AGCCCGTGATAAGGCTTCATTAGCGGTATTTTGTGCGC 83669 37 97.3 32 ....................................G AAGTATGGTCATTGGGGAGTTTTGGAACATGT 83738 37 97.3 37 ....................................G TTTTATCTCAATCTGCACCATCCGTAATTTCGGGAAT 83812 37 97.3 34 ....................................G TTGGAAAGCAACAAGGGATTACAATTCCTTTTAT 83883 37 97.3 38 ....................................G TTCCTATCCAAGTCCTAGCAACTTCAATTACTTTATCC 83958 37 97.3 35 ....................................G ATATAAAAATGACCGCTCCAAGTAGTTCCTGTTGT 84030 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 99.4 36 GTTTAAACCAAAATAATACCTACCAAGGGATTGAAAC # Left flank : AGATAAAATGTTTGTTGTAATCAGCTACGATATTACCGATAATAAACGAAGAACAAAAATACATAACATCTTAAAATCCTACGGACAATGGGTGCAATATAGTATTTTTGAATGTGATTTAACCGACACTCAATATGCCAAGCTACGTCACCGACTCAGTAAATTTCTTAAGGATGATAGCGATAGTATTCGCTTTTATTTCTTAGGGCAATGTTGTCAAGGTAAAATAGAACGCATTGGAGGTGAGAAACCCCCTGATAACACCATCTTTTTTGCGTAAAAGTTAGGGTGTAAATGTACTAATACTCTATCAATTCTCCAAAAGTCTCTCATTGAAAGGTTTATTCTTGTCTTTTAAAACTACCACCCTTACACCCCTTACCATAGCTAGTGTGTAAGTTATTTTACAAACTATTCTGTATCTCTATGTGTTATTATTATCTTAGTCTTACGACAATGAACCTTGAAAATTATATATATCAAAGGCTTCAAGTATGGCC # Right flank : CTTGAATATCTGAAACTTCAAAATTATTAATTAATTCTTTCTTTTTGTGCGGACGTATTGATATTCTCCGGTCACCAAATCAAAGATTATGGTAAGGGATTCTAACTTCAACCACCCAACTTATCAATCAAGTTTTCACTCAGTTGACAGAGGTTGATGTGTCCATTAGCGTTTACCAGTTCCAGACTGGAAGTTTGGGATTGCCCACCCCTACTTAATTCTCTTAATGCTTTAGCTAAAATATTGATTGCCCCTGCTTCATCCCTATCCATTACACAACCACATTTACAAATATGAGTTCTTTGAGATAAAGTTTTCTTGACTATCACTTTACAGTTAGGACATTCTTGACTGGTATACTGTGGATTTACAGCAAAAACAATTTTGCCCATCACCTTACCATAATATTCTAACCAATCAAAGAAAGTTCTCCAAGAAGCATCATTAATACTTTTAGCTAAACGGTGGTTTTTAACCATATTTTTAACAGTTAATTTCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACCAAAATAATACCTACCAAGGGATTGAAAC # Alternate repeat : GTTTAAACCAAAATAATACCTACCAAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 57677-57958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000005.1 Cyanobacterium stanieri LEGE 03274 NODE_5_length_140921_cov_10.1052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 57677 36 100.0 43 .................................... GGCTCCCCCTGCTGACTCGGCTAACTCCTCAAATACATCAGGG 57756 36 100.0 53 .................................... TGCTGAGAACGCTCAACACTTGGGCGAAATCTTGAACATCTGCGTTACCGCTT 57845 36 100.0 42 .................................... GCACGGAAATCAGAAGTTTCGGACATTTTTTGACCTTTTAAT 57923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 4 36 100.0 46 GTCGCTATCCTTCGGGGTAGTGGAATTAATGGAAAC # Left flank : CATCCTGTTTTCGGGTATCAACCTTATCGTATTCGCTGATGCTTTTTTATCTAATAGTTTATGACATCACCGACGACAAACGCCGAAAAAAAATTGCGGATATTCTCGAAGGTTATGGGGTGAGGGTGCAATATAGCGTTTTTGAATGTGTTTTAAATCTTAAGCAATATCGGGAGTTGAAAAAAAGGTTACGAAAGGTTTTTAAACAGGAGGAAGACAATCTGAGATTTTACCCTATTTCGGATCATACTCTTAGAAAGGTGGAAACATGGGGACAAGGTTTGCCCCTCACCAATCCCCTAAAATCAAAGGTTATCTGATTGCGAGGGATCGCTGAATGTATCTCAAACAATCAAAATTCGTCATATCCCTCGTTCTTTTACTAAACAAGGGTTTGAAGTATGTATTTGATAAATTTCCAGTATCATTTAAATCAATTTTTGTTAAGGTTCGCTAAGGTGCGCTGGACAGTAAGCGGAACAAGGAGTTAATATAAAGGT # Right flank : CGTTCATCATTTTCCTTGATAAGAAACTCCTGAGCCCTACGAGTCGCTATCCTTAATATCGTGTGGCTATTCTTTCTCTTTTTATCGTGATTTTGTCGAGTCGTAGTTTATTTAACGACCAAGGGAGAAAATAAATTAAAACACAATTTTACAATCTTTTATTTTCAGTCCTAATATTGTTATTCGCATGAATAAATAAACTAATAAAAAAAGAGTTACTAAACTATTAGTAAATAACTTAACTTATTTGTAAGTAAATAATGCCAAAAGTAGAGATTATTTGCTTGGCGAATTCCAAAAAACTTGGTGGGCGCTGTATTGCGGGTATAAGGACTGATGGAAAGGGTTGGATACGTCCTGTAGGCAGTAATAATAATGATGGAACTCTTTTTGCTAATGATTATACTCTATCAAATGGTAGTGAACCCCAGATATTGTCTGTTATTCAAATTGCTATTTCTACCCCCAAACCCCAATTATATCAACCAGAAAATTGGTTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTATCCTTCGGGGTAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 73747-74089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000014.1 Cyanobacterium stanieri LEGE 03274 NODE_14_length_85100_cov_12.0244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 73747 36 100.0 37 .................................... GGCTGAGGCCAGTTATGTACAGTGATTGCATCGTATA 73820 36 100.0 41 .................................... CCTCGAATCCTTTTTTAGCAACGAACGCTAAAACAATACTA 73897 36 100.0 44 .................................... CTTTCTCGCTTTGCATATTGGATGTGATCATATACGTTGATCCC 73977 36 100.0 41 .................................... CATTTCACCGCCTTCGGGTTGGGGATTAAAAGCTTTTTTGC 74054 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 5 36 100.0 41 CCCTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Left flank : TAGTGATGGAGAGGAAAGTTCTATTGATTGGTTGAGAAACAGGAACGCTTATTACACCTATTCAAATCAAAGTGTTGATGGCGTGGAATATTTTAGTTTAGATGGAAATGTTGCCATTGTCGATGCCTTGATAACCGAAAGTTATACTTTATACAATGCCCGAGGGGGAATTGATACTGATAGCAGTGGTTATCAACAAAGGTTGATTCGTTATGAATTTTCCCTTGTTAATGGTCAGTGGAAAATTAGTGATTACAACACTTTGGAGGTTAAATGGAGTCGGTAATTAACGCTCAATTTTCGGAGGCAAAATCAAAAATCTACACAATAACCAAAAACCCTGAAATGCTCATTACTTCGTGTTATTGTGTCGATCCCTTGCCCTGTATGGGTTTCAGGTTGTTATTTTTGTTGTGCAATTTTGATTTTTTGTGTTATTATTACTATTGTGTAGATTCAAAAGCTAAAACTCTTGTAGTTCAATGCTCCTGAATCGAAGA # Right flank : CACCTCCTTAATCATTTAGGTTTTGGGGGTGTTTTCTATGGGGAAAATTCTGAGGACTTTTGGGGAAACCTAAAGTAAGGAAAAAAGTATTGGAAAATCCTTGACGAAATGGACATAATAAGGTTATATTATCTTTGTGGCTCAAAAAAGAGCTAAACCTAACGGTTTCGAGACGCATCGTTTTTCCTTTTTTTACTCAAATGCTAACCAAGGGGTTAGTGTATCCAAAAAAAGGAGAGTAGAATCATGTTAGGTTTAAGATTTAAAAGTGTTGCATCTCAGTTAAGAGTATTAGCCTTTGGTGCTTCTGATTTGAATGCGGATCATTTATTGTCTGTGGCTGAAAAATATTTGCCTCGGCGGGTGACATGGGCAAGAAATAAAAGGCATGATTTCAGTGATGTATATGTGTTATGGGATGTCCTCAATATTGACGCTGTCATTGAGTTGGAGAACGAGGATGGCAAATTAGTTCGTGTAGGGGTTTCTCTGGTGGAAAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1867-2127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000004.1 Cyanobacterium stanieri LEGE 03274 NODE_4_length_158833_cov_10.713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1867 36 100.0 38 .................................... CACATGCGCACGAATAACCGAGGAAAAGTCTTGATTAT 1941 36 100.0 36 .................................... CCATTACTTGACCTGACTTTATTATACAAGTCGACT 2013 36 100.0 43 .................................... ACGAAGAATCTATCTGGGTCACGAAAGAGAATGGTACCAGATG 2092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 100.0 39 CCCTACCCATGGGGTTACATGGGAATAGTTGGAAAC # Left flank : CTTTTTGACCATTTATTATCATTGGTTTGAGGAAAATATTAAGACTTTTGAGGAAAAAATTGCCTATTTTAAAAGATATTCTCCCCCTCCTAGATGGTTAGAAAATGTTGTATCTGCGGTATGGGATATAGAACCTTGGAATGATGAAAATTTTGATTATTCTCCCTATTTTGAAAAGTTAAAATCCTACGGTTTTAAAGATGTTGATAAGTTTGAGGAGGATCTAAATAACGAAAAATGGCTTTAAGTTAATTTTTAAGGGCGATTAGTCGCCCCCATCACCCCATTAATGGTCATTGTCAATAAATTTTTCTCAAAATCTACACAATAAGGAAAATCGCTCAAATGCCTATTATTTCGTTTTATTGTGTCGATCCATTACACCATAAGGGTTTCAGATACATTTTTTTGTTGCACGATCTGGATTTTATGTGTTATATTTATTATTGCGTAGATTCAAAGGCTAAAACTCTTGCAGTGTAATGCCTCTGAAACGAAGA # Right flank : CACCTCCTTAACTAGTTAGGTTTTGGGGGTATTTTCTATGGAGAGATTTGGAGAAATATGAACAGAGTAGGGTGATCATAAAATGAAGAGGTGTGCGATCATGAAATAGCGCTGTGCGATCGCCCTTAAGAAAGACTCTTTTCCTTAGTCAGTTTATCTTAGTGATTGTTGAAAATAAAGAACACAAAGAAGGAAAAAATGATTACAGTACAAGTTATTTCAAGAAGTAGCGGTAAACCTGCCACTGGTAAACGAGTTAACATAAGTTTTGATAGTTTATTTAGGGGCATGGGACGAGAACAACGAACTGACTCTCGAGGACAAGCCCATTTTAGTCATGATCCAGGTAATGGCAAAGTATATGTAGATGGTCGCACTGTTTATCAAGGAAATTTAAAAGGTTGTATTGTTGTTCATGTGTAATTCAATAAAATAAACTTTTTAGGACTGATCGCACACAGGGATTTGTTTCCTTGACCTACTGGGCGATCGCCCTTAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCCATGGGGTTACATGGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 6183-6508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000004.1 Cyanobacterium stanieri LEGE 03274 NODE_4_length_158833_cov_10.713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6183 37 100.0 37 ..................................... CTCAAGTGCAACGGTGGCAGTCTTTATAACGCCAAAG 6257 37 100.0 39 ..................................... CTTTGAAGAATCTTTATGATCTGAATACGCTTGTGAATC 6333 37 100.0 32 ..................................... ACTCTGATACCTACAGAGCCACTACTAATTGC 6402 37 100.0 33 ..................................... TTGGATAATTTCGCGTACATTCATTTTCTTTAC 6472 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 36 ACCTTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Left flank : CCATCAGCCACAGATACACCAAACTCTTGAGTCAATGTTTCATAACTTACCCCCGCATCTTCTATCACATCATGTAACAAGCAACATTGAATAAGTAAATCAGGATTATCAATATCATCACCCTCACAAATTGCCCTCATTCCCTCCATTGTCACACTACCGATGTGATTAAGATAGGGTACCTTAGAACCTGGCATTAATTGACGTTGATGGGCAACAGAAGCGAAATTCCATCCCTTGAGGTAAATTTCAGGATCCCAATATTTCATTGATTAAACCAGTGAGTTTGATTTGCTCAAATCATAACATTTTGACCGAAATCTACACAATAACTAAAAACCCCCAAATGCTCATTATTTCGTGTTATTGTGTCGATGCTTTGCCCTGTATGGGTTTCAGGTTCTTATTTTTGTTGTGCAATTTTGATTTTTTGTGTTATGATTACTATTGTGTAGATTTAAAGGCTAAAGCTCTTGTAGTGTAATGCCTCTGAATCGAAG # Right flank : CACCTCCTTTACAATTTAAGTTTTGGGGGTGTTTTCTGTGGTGTGTTGTTTGGGAATAATAATTAATGGAGAATAAATAATTGATAATGGCGATTTCTGCCTTTTTTATGTTTGTAGTATGCTCAAATCTTTGATATTTATAATTAGTGATTTAGTCAACACAACCTAATTAATTATTTTTTATCAAGTCTTAAATGTAGGGAAAAATTAACCTTTGCCCCGCTTAGGAAGATACAATAAATTATTAAGACTACTAAAAATATTTGCTTTATGAAAAATTACTCACTATATTATTTTTATAAAGAACAAGAACTATTAAAACCCCTTGTGGATAAAGTTTTTGTGAATTATGTAATAGTGGAACTAGAAGAAGATAAAAAAAGGATCACAATGATCAGGAATTTAAAGCAACTGGTCAGTGAAACCAACGCAAAGGAAACATATTTAAGATATTTTTATAAGCGTATAATTAATTTTTATAAGGCTTCTTTTTTAGATTA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 14230-14783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWC010000004.1 Cyanobacterium stanieri LEGE 03274 NODE_4_length_158833_cov_10.713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 14230 36 100.0 41 .................................... CACTGTTTACTCCACGCAAAGCTGATGTTGTATTAATTCTT 14307 36 100.0 36 .................................... GAAACAGGATGAATAAAATTATTAAAATCAGTAAAC 14379 36 100.0 41 .................................... AATACAACACCACCAACAGATCCCCAGTCTTCCAGAGTATT 14456 36 100.0 34 .................................... TTTTCCGTCTGCTGTTGTTACTGTACATTTCATT 14526 36 100.0 36 .................................... CATCGGTTATCGAGTATTTTTTTAAGTGCTTCTCTT 14598 36 100.0 40 .................................... GCGACTCCGCTCAAAGCAACAACTAACCCACCAATGATAC 14674 36 100.0 38 .................................... TTTCAAGTACTTCAACTATACTTTGGAATTCTCTCCAA 14748 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 99.7 38 CCCTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Left flank : ATCAATCGTTTCTCCATCAACCCCAGCACATCCCTTATTTTTTGCCACTTTCTGCCAAGCGGTTTCAAAATTATTAAAGTCCAAAAATTCATCAACAATATCTATATCCGACATTTCCAAGATTTAATGTTTTTTTGTTCCTCAATTACAACAACCCATAGGAAAAGGGGTTTTCTTAAAAATATTTGTTTTCCATTAGATTTCACTTATTTTGATAACAAAGACTGGTTTTATGGCTTCCAAAATATCCCCAAAGCCTTATCATGACTATTTTACGCTGTCTCTTAATAGTTCTTATTGCCATGGAATAAAACATAAAATCTACACAATAACCAAAAACCCCCAAATGCCCATTATTTCGTATTATTGTGTCGATGCCTTGCACTGTATGAGTTTCAGACCTATTTTTTGTTGCGCGATTTAGATTTTATGTGTTATATTTATTATTGTGTAGATTCAAAGGCTAAAACTCTTGTAGTGTAATGCCTCTGAATCGAAGA # Right flank : CACCTCCTTAACCATTTAGGTTTTGGGGGTTTTTCTCCTGTTGTTGTGATAGATAATTAAATACAAAAAAAACCCCCCGACTCTTTGAGTAAGGAGAACCTAAAATGATATAGCTAAAAATATTTATGTATCGATGTTACTCATCAAAATAGTTTGTATCATAATATGACTCTTGGGCAGTGGAACAAAAATCATCACTATGTTGCTCCCAAAAATCATTTTCTGAAAGAGGAGTAACCGTACAAAATAAGCAATTTTCATTGTGTAAATGTTCAGGTATAGTCTTTAACCATTGTTGCGAAGGAAAATGGTAAACCCAATCTAAACCCTCATCCACATTGACAAATCCAGCTATTACCCCATGAAGAATTCCAACCGTAGTACTAGCACATATATTATTCAACCAAAATACCGCAGGAGCTTCCACATCATCAAGATAACCCGCAGAATTTGCCAATTGAGTGATAGAATTCGCTGCTGTTTCCAAAGCCGACTGCTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCCATGGGGTTACATGGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //