Array 1 158906-158606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 158905 36 97.2 30 A................................... TTCGTGTGAAAACTGTCTCGGTACAGCTCT 158839 36 97.2 30 ..........................T......... AAATCGCTTTTTCATCCAATGTCTGCGTCA 158773 36 100.0 30 .................................... GCACGACTAAAAGCATTGTCAAGCTGGTTT 158707 36 100.0 30 .................................... CGCCGGTTCCACGTATGCTTGGTAATATTT 158641 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCCGAAAATCTGACTATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCATTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCAGATGAAATCGGGAGATTGACGATGATGAGCGAGCATCAAGGCAAAAAACGGATAACCGACATTCGATATAGAAGAAACTTGCCTAAAGCCATGACAATTCACGACGTATAAAACAAACAAATCCCGATAAAAATCAGCAAAAGAAGTATATCACAGAAAGGGAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGTATCTTAAATATAACAAAATGAGAGGAACAAATCAACGAATAACGTAATTAACAAAGTAAATATCAAGTATAACTATGTTTTTCCAACGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGTCTAATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCAAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATCTTCTCCCCACGCCTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 159692-159523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 159691 36 97.2 31 A................................... CGTAAACGATCGTCAAACCGGCGCGGCAATA 159624 36 100.0 30 .................................... TCTCCGGTCTTCTAAACGCTCGTCGATAAT 159558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 99.1 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTTCCTAAAAATCTGACTATATTTTCACTTAAGTGAACAATCAATTTGCTTATCTGTAAGGTGGAAAAATATCGTAATTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAATTTATTCCTCAATCACCGAACAAGAAATTTTGGAAAACGAATTTTAAAAGTCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTATTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGGAAAATATAATGGAATTGAAAAGTAAAATCAACGAATAACATAATGAAGTAAGTAAAGATTGAGTATAGCGACGTTTTGCCAGCGTTCT # Right flank : CGATGTCCACTTAACCCTATGTTTTATAAGGATTAAGTGGATATTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTTGACGTGTCATCCACGTTTTCCCCGAAAATCTGACTATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCATTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCAGATGAAATCGGGAGATTGACGATGATGAGCGAGCATCAAGGCAAAAAACGGATAACCGACATTCGATATAGAAGAAACTTGCCTAAAGCCATGACAATTCACGACGTATAAAACAAACAAATCCCGATAAAAATCAGCAAAAGAAGTATATCACAGAAAGGGAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 161250-161017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 161249 35 80.6 30 .CC...-.........T.G...C......A...... ATGGTGACTTAATTGCACTGACACCAGCAA 161184 36 97.2 30 .....................T.............. GCAATACGCCGTTAGAAAATGAAAACGGCT 161118 36 100.0 30 .................................... TTTTGTGCGGAAATGGAGCGCTGAAAACAA 161052 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TCGCAAAACAAAGCGAGTCAGGTATGGCTCAAATTGAAGCTACCGAAATTATCTGGCAAGCGGAAAAAAAGTGACTTCTTCTAGTTCCCACCTCAATAAAATCGGGGCATTAAAAATTTTTACCCTAACGCCTTGTTATTGTTATATATATTTAAGGTGGGAACAAAATCGTGTAACTTCATTCAAAATTTCCCACCTTAAACACCTATTTGTCTCAAATATCGCGTCACATTCTAACGGCGTAATCAGTGCAAGTCCTTGCTGCACTTGACTTTCCGTTTGATAGCACTTTGATTGAAAATGATATTAAAATGATAGCGAATTGATCAAAAATGATAGTCTGCCAGATCATAACGATTTTTTCCGCTTTTCCAGCCGCAATCTTGTTTTTATCATAATTTTCAAGCAATTGCGGTTTTTTTCGGTCAGTTCTTCATGACTCAAATATTCCGGAAATCTGTCTCAAATAACACAGTCCCCTACAGCGCCCGTTTGGAATG # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTCTCTAAAAATCTAACCATATTTTCACATTGCTTGCCAATTCAGAAAGGTGGTTAAATCTCTCACCGCTTGGAACACCTTCTAAATTAGCATTTGCTAACGACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAGTCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCAGAAATGCAATCCCCACATCGCTAAAAGCCATGGCG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 201049-200485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 201048 36 97.2 29 ............................A....... CATATTGTTAAGTCGCGACGCGCCACCAT 200983 36 94.4 30 ..............A.....C............... GAAACAATATGGTTAATGTTTTTGATAATG 200917 36 100.0 30 .................................... GAATGAGAGAATTCACTATCGGCAAATAAT 200851 36 100.0 30 .................................... TAGGTGGTGCTAATTTTGGCAATATCTATG 200785 36 100.0 30 .................................... AATTGACGAAGAACTTGGCGCGCATAAATA 200719 36 97.2 30 .......................T............ GCAGCACGATTGATGCATATTTTGACTGCT 200653 36 97.2 30 .......................T............ GTCATTGCTTGCCGACAATGTGTTCTCTTC 200587 36 100.0 31 .................................... ATTAGCTATATTTAAGCTATAAACAAACTTA 200520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 98.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTGTTTCTAAACTGATGTTTGATTTTCCGCATTCAACCTTAGAAAGGAAAGCCTGTTCAATGCCCGTAACTCGTTGGATGTCTTTTTGCGTCATACCAAGCACTTTACGTACGGCGCGAAGATTTTTCCCGAAAATCGTTTTTTCGTCGTCCATTGTTCCATTCCTTTCTCTCCCGCTATATTCGCGATACACATGTTTTGCTTTTTTCCCATAAAAAGCAATTAAATATGTCATAATCCACATATTAACCGAATTAACCAAGAAAGGAAATAGGACAAGGGAAAGAAAAACTCTCGAAAGCAGCGAAACTTTGAGGGTCTTCATAAAAAACCAATAGTAAAGAGCTAAGGCGATCAACTTAAAATCGCTTTAGCGTCTATCTTGTTCTGTCGCAAGAAGTTTTTTGCGGAACGGGTTTTTTTGCGCTTTTTTTAGTCTGAAAAAGACAAATGTTCAACCAAATAGCGATTGTTTCCCAAAAATGGAATGCGTCCGTGTT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTATCTTCCACGTTTTCCCTAAAAATCTAACAATATTTTCTCATAAGCGCACGGTCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTTGTTACGATCTTTTTAAAACAGGATAAGCCGGCATGTTCGGGCTTGTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTCTCCGTTTATAAATGCTGGTGAAAGCGCCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCGGGCTTTAAGACAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGGCACATCCGGTTTGCTTTTTTCAATTCGAGCGTGGCTAAAGCCGAACACGCCTGCCCCACTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : GTTGCGGCTTGACCGCATTTTCTTATCTGTTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 202989-202820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 202988 36 94.4 31 A..........................G........ CGAGATCACGCCATGCTCGCTCTATTGGTTT 202921 36 100.0 30 .................................... GAGCCAAAGGTTTAATGCCTCCAGCCTGTT 202855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 98.1 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TGTCTTCCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAACCGTGGTTGGTCGCTCACTGCTTGGAACACGTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATGGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATACAACAAAATGAGAGGAACAAATCAACGAATAACATAATAAACTAAGTAAAGATTGAGTATAGAGAAGTTTTACCAGCGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTTGACGTGTCATCCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACTGCTTGGAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAGCAACCTATAATCAGTCCTTATCGTCTCTGCTGTTCCAGAAGCCACTGATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCGGGAAATGCAATCCCCAGATCGCTAAAA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 6 204355-203594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSJ010000001.1 Bartonella sp. M0280 NODE_1_length_2394181_cov_181.235394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 204354 36 88.9 29 ACA..C.............................. TGGCTGCTTTTGAATGCCCTGCTGGTAGT 204289 36 100.0 29 .................................... GGTTTGCTGCCGCAATTAATTCCATGCCT 204224 36 94.4 30 ..............C................C.... TTGGAATGATAACAATGCCGCTGATCTTTT 204158 36 100.0 31 .................................... CAAAACCTGAAGCGCGAAACGTTGCAGCACT 204091 36 100.0 30 .................................... TGTTTTGGGCAGCCGGATTTCGGCTCATGA 204025 36 100.0 30 .................................... AAGAACATTCGAGTTGACGTATACTATTCA 203959 36 100.0 30 .................................... AAATGCATCAACATAATAAAAGCCAATGTA 203893 36 100.0 30 .................................... TGTTAAAGGCGCTAATAGATAGTCTCTTTG 203827 36 100.0 30 .................................... GAACCGCTATTCAGGCCGCCGGCGTCAATA 203761 36 94.4 30 ..............C....................T ACCTTGTTACTGCTGCCAATGCAGCCTTCA 203695 36 100.0 30 .................................... AAGGTTTGTGACTTTCTCCACTGCTTTAAC 203629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTGGTATGAAATTCGGGGCCAAGGAAATTTACGCCCGTTTCGGCTTTCGGAAGGTGTTGATGGCAGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCCCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTGGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACCGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGAAGTTTTTTTAAAAAAATGCCGTTTTCCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCTTCCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAACCGTGGTTGGTCGCTCACTGCTTGGAACACGTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATGGCTAAAAGCCATGGCGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //