Array 1 229712-230897 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSL01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4373 NODE_1_length_405153_cov_3.98207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229712 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 229773 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 229834 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 229895 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 229956 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 230017 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 230078 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 230139 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 230200 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 230261 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 230322 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 230383 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 230444 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 230505 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 230566 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 230627 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 230688 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 230749 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 230810 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230870 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247567-249182 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSL01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4373 NODE_1_length_405153_cov_3.98207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247567 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 247628 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 247689 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 247750 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 247811 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 247872 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 247933 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 247994 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 248055 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 248116 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 248177 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 248238 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 248299 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 248360 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 248421 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 248482 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 248543 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 248604 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 248665 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 248726 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 248787 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 248848 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 248909 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 248970 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 249031 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 249092 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 249153 29 100.0 0 ............................. | A [249180] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //