Array 1 107125-106297 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NCVG01000019.1 Streptococcus mitis strain RH_43861_09 s_mitis_RH_43861_09_ID_9, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    107124	    36	 100.0	    30	....................................	CAGCTCTATTTCAGTAAACTCACTATTTAA	
    107058	    36	 100.0	    30	....................................	CTTACTACTTCGCGACATTTTAGCGACAGT	
    106992	    36	 100.0	    30	....................................	AGCTTTAAAGACATCGAGATTGCGACTGGT	
    106926	    36	 100.0	    30	....................................	ATTCCAAATCATAGAGACCTCTTCTTTCGT	
    106860	    36	 100.0	    30	....................................	CGCACCAGTTGCAGTGATAGTCACATCCAC	
    106794	    36	 100.0	    30	....................................	GAAGATCAAATGTGGGACGTCGTTGACGGT	
    106728	    36	 100.0	    30	....................................	TTATGGTTCGAGTACGCAGATAATCATCCG	
    106662	    36	 100.0	    30	....................................	CTTATCAATGTTTTCTTCTGTTGTTTTAAA	
    106596	    36	 100.0	    30	....................................	CAAAGTCATGCGGCATCACCAAATTCCATT	
    106530	    36	 100.0	    30	....................................	TTCAAAGGCAAGCGGTTCTCTGAGCGTGTT	
    106464	    36	 100.0	    30	....................................	TAGCACAAATGGACCTGCACCATTGCCTGC	
    106398	    36	 100.0	    30	....................................	TGTCCGATAATGAACACCCTCTCTCTGTTT	
    106332	    36	  97.2	     0	..................................T.	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  99.8	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGATTTTTAAATATCTCTCTAAAAAGAAACTCCTTGTTTTTATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATGTCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTATGATTTTCCGCAGTATGTATTGGATCAAGACTATTTCTTGAACCCCGAAAATATGATATAATAAAAGTAACAATTGGGACCTAGCGAACTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAATATTTTTCTACGAG
# Right flank :  ACATTAAAAGCTACTCACTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAACCCCATTCCCTTGTAGAGAAGCAAGACTGCGAGTCCTACGAACAACACTAACGCTACCAGTCTCTGACTAGCGCTATACATCCGTCTTTCGCCTCGAACTGGAAAGATAACTGCTAGAAATGCTCCACCAACTGCACCACCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTTGCATAGCGAAGAATGATAATCGCAGCAAATAGTCCATAGAGAGAAGTAGAGGCCCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCAGATAAGAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAGAGA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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