Array 1 11151-12224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000010.1 Listeria booriae strain FSL L7-1069 NODE_10_length_88404_cov_33.240844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11151 30 100.0 34 .............................. CGCTTTATACAGCGCAACCAGAACAAATTTTAGG 11215 30 100.0 37 .............................. CCCAAAATTAACAAACGACAACAAAAAAATTGACTAC 11282 30 100.0 37 .............................. ACCGCATCGGCATTGAGCGGCTTAGATATTAGCGATG 11349 30 96.7 35 T............................. TGTAGATAATGCTGTTCAAGAACAAATAGCATTAC 11414 30 100.0 36 .............................. AAATAACTGCCGTGAATCATCGTACAGCGCCATTGC 11480 30 100.0 37 .............................. GTGGATATAAGCAAGCTCAAGACGAATGATATTGTTG 11547 30 100.0 36 .............................. TAAACAGAAATAATTGTATCGACTTCCAAAAGGATG 11613 30 100.0 35 .............................. TTGATTAGTTCGGAGTATTCTGGTGACGTCGTGAT 11678 30 100.0 36 .............................. TTCAATAATTATGATAGCCAATTTAAAACGCAAGCG 11744 30 100.0 36 .............................. AAAACTGGGGAAGTCAAAACGAATGCCGTGGAAGAA 11810 30 100.0 35 .............................. GCAAGCGGCTGGACAGGTAAGAATATGTACGTGCG 11875 30 100.0 34 .............................. GAGGATATGCTGACAACAATTGACATGAAAAATA 11939 30 100.0 37 .............................. CATTAACGTCCGCTAAGATTGCCGCAATCAATACATC 12006 30 96.7 36 T............................. GTGTCTGAACAAGATGCTAATGACATTGAAGTAGCA 12072 30 100.0 36 .............................. ATGTTCCTCGGTATTTTGAATAATATCGTGAAACAA 12138 30 96.7 27 ........................A..... TAGGAGAAGGGCGCACTTATACACCCT Deletion [12195] 12195 30 76.7 0 ......CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.0 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCCGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCGATCCAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTTTTTTGCGTTTCCCATTTGAGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 148342-147923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000001.1 Listeria booriae strain FSL L7-1069 NODE_1_length_211984_cov_33.996480, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 148341 30 100.0 36 .............................. CTCGTCATCGTCGTCTTCAATGATTGCATCACCCGC 148275 30 100.0 35 .............................. TTTTGAGTAGACAGACAGAGGTTATGGAAAATTTT 148210 30 100.0 34 .............................. TGGTAAAAGTACCTTGCTGGATAAGCTGGGAAAA 148146 30 100.0 34 .............................. AACGTTGATATAAATCATTCTTCTTTCCGCTTTT 148082 30 100.0 35 .............................. ATAGTTAAGATTGTTGTTCACTAATATTACCACCT 148017 30 100.0 36 .............................. TCACTTTTCCGCTTTCATCCAATACGCCCACTGTGT 147951 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 98.1 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTATTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTGGTTAATAAATATACAGCGGAATAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTTGATAAATGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTGTTTTCGAAGTTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGATTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGAATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGATGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTACCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1917-2142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000029.1 Listeria booriae strain FSL L7-1069 NODE_29_length_49383_cov_25.841317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1917 30 100.0 36 .............................. CACGAAGATTTGAAGTACACATTCAAAGAAAATATT 1983 30 100.0 36 .............................. ACGCATAGCTCGTATAATCTGGAACTTTCGCTTTAA 2049 30 100.0 34 .............................. TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 2113 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAAAAGTAGAAAAAAATAAACAGGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTACAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 5390-6209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000029.1 Listeria booriae strain FSL L7-1069 NODE_29_length_49383_cov_25.841317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5390 30 100.0 36 .............................. AAGGCTAGAAAAATTTATGAAGATGCGACGAAAAGA 5456 30 100.0 34 .............................. CTCTTTCCCCAGCTTATCCAGCAAGGTACTTTTA 5520 30 100.0 35 .............................. TCTTACGCCACATCCGCGAATAGAATTAATTTAGG 5585 30 100.0 35 .............................. CTCGTTACACCAGCCTGATACAAAACCCGAGCTAT 5650 30 100.0 36 .............................. TATTCCTTCTTCCTCCTTATAAATCAATTGCCCTAT 5716 30 100.0 36 .............................. GAATTTTAGTCCATTATATTTTCGAGCTAAGATTTC 5782 30 100.0 37 .............................. TCCCTCTGCGTTTTCCATGGTAGTTACTATTGCTAAC 5849 30 100.0 36 .............................. AGAATTAACTTTTACTTCTAACGTTTCTATTTTTTC 5915 30 100.0 36 .............................. GCAATTAAATTATCTTGTTTTGTTACATCATGCTCC 5981 30 100.0 36 .............................. GTCTTCAACGGCTAAGCGAGAATACTTTCTGTTTTC 6047 30 100.0 37 .............................. GCAGGTTGCCGTTACTTGCAATTAGACGACACCTCAA 6114 30 100.0 36 .............................. GATTACGATGCATCAAATCATGTTATTGCCAGTATT 6180 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTAAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGACTTGCAAGGGTAACAGTTTTTGTGTCTAGTATTCTACCATTGGCATCATATGCAGTTAGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 9293-9790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000038.1 Listeria booriae strain FSL L7-1069 NODE_38_length_31409_cov_65.856951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9293 36 100.0 30 .................................... AAGATTTAACAGTAGCGCACCCATTGTTAT 9359 36 100.0 30 .................................... AGCAGTTGTTGTATTTGTCGCATTTTCCGC 9425 36 100.0 30 .................................... CAAGAAGCGGCAACTTCAAAGACGAGCATG 9491 36 100.0 30 .................................... CTGGTGTAATCGGTCAAGGATACATGGATG 9557 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 9623 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 9689 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 9755 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACAATTTGCTCCTCCTTTACGAAAAGGTGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGTTATATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGATCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTCAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 15155-15455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUH010000038.1 Listeria booriae strain FSL L7-1069 NODE_38_length_31409_cov_65.856951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 15155 36 100.0 30 .................................... ATTCTGTATCATTGCCGCCGTTCACTACTT 15221 36 97.2 31 .................T.................. GAATGAAATATCGACACAGGTCAAAGTGACC 15288 36 97.2 30 .................T.................. ATGACGTGGTTTTCGGCTCAAGTAGTACCG 15354 36 100.0 30 .................................... TGCTATCGAGGCAAAACGACTTACCAGTCT 15420 36 83.3 0 ...........................A.A..CCCG | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.5 30 GTTTTAGTCCTCTTCTGGTTTGAGGTACTCTAAATC # Left flank : AACTTTAATACCTCTGCCTTTCATTGCAACAGCGCCGATAAGTACCGCTGATATGATAGAAAAGCTTTGTGCCTTCGTGATTGGCTCACCTGTGAGTAGATTATAGCCTTCCATTGCGGCTAGCATGTACTCTGTTTCAAAATCGATATCCGTGTCTTCTACTTCGCGCTTAATTGTTCCATCTTTTAAGCCATCATTATAGGCAATAGTTGCTCTTGCGGATTCTTGGTCCGTCACGCCATTCTTGCTTAAAACCCAGTAACCACCCTCTAACGTCTTCATATAGTCATCAAAGTTATACGTTTTCTTTGGCTTCTTCTCTGGCACTAGATGATCCAGCCAGCCTAATTGCATTTTACTGGAATCATAGGTGTGTGTCGTGCCGTTGAACGCCTTTCCAGCGAGGATTTTGTTTGTCATCTTCTTTGTTGTGCGCTGATTTTTTCTCTTCACAGCCATTACAATTGAAAATATTATTCCTCACTTATCCACAGCAGAGG # Right flank : GCCTATTCGCTTGTAACAACATAACTATACAAGATTATTAACGGGGCTGCATCTTGACAGATTACCAAAGCATAATTATTTTTTCATAAATTAAGAGACAGCTCAGTAGCCATCTCTCAAACTCAACCAATTATCTCCCACCAATAAAATAGCTTCCTTCTTGAAAGCCCTTCATATAAATTAATACTCGTGCCTCAACCTCACATATAAATAACTCATCTAAATGTTTTTGGAAATCTTTATTTTCAAATGCCTCCAGTTTTTCTACGATATCCATCTGACGTTTTCGTAAATCTACAAACGGATCATTCAGTTGATCTTCATTCAAAGTTTGTTCTACTCGATTTAAACAAAATTCTCTAAAGTCTTTATTAAATTTCTCCAATATCCAATACCCCTTTCGATGTATATAATTGCATTATAAATATTATTGCCGATATCGGCTAAACTATTCATCACATTATATAATAAAATGTCGATAACGGCAAATATAATGAGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGGTTTGAGGTACTCTAAATC # Alternate repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //