Array 1 9465-7394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANS010000013.1 Vibrio cholerae strain C19S.b Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9464 28 100.0 31 ............................ TATGAAGCGCGTTCATAATGATGACCGATTT 9405 28 100.0 32 ............................ ACTCAGAACCGAATACCGTTTTCTTGCAAATC 9345 28 100.0 33 ............................ CATGAAAAGACCCCAACCTGGGGGAGTGCCTTG 9284 28 100.0 32 ............................ TGTTCAGACCAAGAACCTGTTGAACCCGTTCC 9224 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 9164 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 9104 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 9044 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 8984 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 8924 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 8864 28 100.0 32 ............................ ATGTTTTTTATGTTTGGGGATCCTGTTCGCCA 8804 28 100.0 32 ............................ ATATTGGCGCCTTTAGAGTTCTCCCAACCTTT 8744 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 8684 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 8623 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 8562 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 8502 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 8442 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 8382 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 8322 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 8262 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 8202 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 8142 28 100.0 32 ............................ TGCACATCGAAGGGGTGCGCGATGTCGATTTG 8082 28 100.0 32 ............................ GTGATAAACGTTCATTTCGCTTGGATAGGTCA 8022 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 7962 28 100.0 32 ............................ TTGCGAATACCTCGTTGATGGTGTAGATGCGG 7902 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 7842 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 7782 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 7722 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 7662 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 7602 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 7542 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 7481 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 7421 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //