Array 1 601-305 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNF01000021.1 Nitrobacter winogradskyi strain NBRC 14297 sequence021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 600 32 100.0 34 ................................ ATTGGCGACGGCTTTCTCTCGCTTGAGACGTAGG 534 32 100.0 34 ................................ GTCTATACGGCGGTCGCCTCTCAAGGGGCCGCAT 468 32 100.0 34 ................................ TCGTCGACCAATTGGAAGCAACACTCGCGCGTTA 402 32 100.0 34 ................................ CTCCATGTCCTCATGAAGGTTCGGGAGGCGGATG 336 32 84.4 0 ....T.C...............A....A...A | ========== ====== ====== ====== ================================ ================================== ================== 5 32 96.9 34 GTCGCGTCCTTCACGGGCGCGTGGATCGAAAC # Left flank : GCCATCGCTGGCGAGGGGCGTCATGCTTGTGCTTGTGACTTATGATGTTCGCACGGCTGAGCCTGGTGGCGCAGCGCGCTTGCGGCGCGTTGCCAAGACTTGCCGCGATTATGGGCAGCGTGTGCAGTTCTCTGTGTTCGAGATCGAGGTCGATCCGGCGCAATGGGTCAGACTGCGCGCGAAGCTCGAAAGCTTGATTAAGCCAGAGCACGACAGCCTTCGCTATTACTACCTTGGTGCGAACTGGCAACGGCGTGTCGAGCATGTCGGCGCGAAGCCTGCGGCCGATCTTGGTGGCGCGTTGATTGTTTGACTTCAAGCCCGCGCGAACCCTAAGCATGCGACATTTTATGGGCCGGTTCGCGCTCTAGCGAAGTCATTCAAATCGTTCAATTATCCGGTAAAGACTGACCACCAGCGCTCATCTATACTCGGCTAAATCGTCGATTCGCGCCAGGGAACAAGATTTCTCCGGGGAGAGAATGCATTATGGTCAGGCA # Right flank : ATGAGCTCCGGAAGGCACTGATCCTTCGGGATGATCAGTGGCAGCGGATATCGCAGCACATCATCGGCGACGAGTGTACGCGCGGCTCGTCGGGCCGCGACAACCGCATGTTTATCGAAGCGGTGCTTTGGATCGTGCGGCGGTCCGCGTGTCGTGCGTTCCAAGTCTAGTAGGTCGAAACAGCTGCTACAACCTCCGAGGGCGTGATCGCAGACGACGATGAAACAGCCGATACCGCTCTTCTTGGAGGCTGTAGGAACAACATTATTGCATGGGTGAGGCTAGCGGACCTGTCCACTAGGTCA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29977-28756 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNF01000077.1 Nitrobacter winogradskyi strain NBRC 14297 sequence077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29976 36 100.0 30 .................................... CCAAAACGTCGTTGACGCGTCTGTTCTGTT 29910 36 100.0 30 .................................... CTGAATCAGTTTGACGACACTCATGCTCGA 29844 36 100.0 30 .................................... AGAAACGGTCAGGGTTCAAAGGGTGGCGTA 29778 36 100.0 30 .................................... CACGCCCTTGCGCACCCGGTGGATCGCGTC 29712 36 100.0 30 .................................... GCCGGCCATCTTTCCGAAGCCGACGCCGAG 29646 36 100.0 29 .................................... CACCGGTATGTCCGGAAAGATTGGAATGG 29581 36 100.0 30 .................................... AATTGCTCAATGGGTAAGGCGTGAAGCTGG 29515 36 100.0 30 .................................... GTCGCCGTAGTAAACCTTGTAGTCGAGCGA 29449 36 100.0 30 .................................... CCACAACCTCCCCGAGTAAAGCCAGCATAA 29383 36 100.0 30 .................................... TCGCGCACCCGCCGAGCACGGCAACCGCGG 29317 36 100.0 30 .................................... AAAGCTCCATATAAAAAGCCCCCGCAGCTT 29251 36 100.0 30 .................................... GATCCGAAGAAGCGGCTGATTTCGGCGCTG 29185 36 100.0 29 .................................... CACCGGTATGTCCGGAAAGATTGGAATGG 29120 36 100.0 30 .................................... AATTGCTCAATGGGTAAGGCGTGAAGCTGG 29054 36 100.0 30 .................................... ACACGCTCACCGAGGCTACGTCGCGCGAGA 28988 36 100.0 30 .................................... CCAGCGGCTTTCAACGTTGTTGCGACTTGA 28922 36 100.0 30 .................................... GGGCACACACACCGCCTCGGCTGGCCGGGA 28856 36 100.0 30 .................................... ATATTTTGACCAGACATGGCATTGCCTAGG 28790 35 97.2 0 ...................-................ | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 ATTCTAGCGGACTGGTGATTGAGGGCCAACCGCAAC # Left flank : CCTACGCCGGCGAAGCCAATCAACTGACCTTACCGCAGCCGGGTCTGCCTCTGGGCTTTTGAACATGGCGGGCGCCCCGACCCGATCGAGATCACCGCCGGCACTTTCGGGATATCGGATCATGTGGCTTGTCGTCCTGTTCGACCTGCCGGTCGGCACCAAGAAAGAACGAAAAGCGGCCAGCGGCTTTCGACTGAAGCTTCTCGATCTGGGCTTCGAGATGAGCCAGTTTTCTGTATATTTGCGATTCTGCGCGGGCAAGGAACAGGCTGCGGCTTACGAACGCAAGATCGAGCAGTTCATGCCGGCGTCCGGAAAGATCCACATTATGGCGATCACCGATAAGCAGTACGAAAACATCCGGACCTATCGCGGAAGGAAACGCGAACGGAGCCCGGAAAATCCGAATCAGTTCGTTCTGTTCTGAGGGAATTCACGTTGATCGCCCCTCCCCGCAGCAAGGAAAAAGGCCCTGTTTCCAAGACCTTGATCCGACTTGG # Right flank : CATCAAGCTACTCGATGACGAGTGCCTTGGCCGCTTCGATCTTGTCCAGCCTGTACGTGATCGGCGAACCGTAGCATCTTCTGACCACTCCGGGTTGCCTGTCGACACTCGATGCAACGTTGGGTAATTAACGTGTGTCGGATGAAACCGAGGCTGCGAACCGCTTAGGGATACACCAGTGGCACCCACGCAATTCTCAACCTATTACTCTGCCCTGCGGTTCCTGGTGCGGTGCCTGCGATATCGTTACCGGACAGAAAAACTTCAGATCCGAACGATGATGCGACTCGATCTACGCGGCGCCACCGTTCTGGATATCGGGGCCAACAAGGGTATTTATTGCTTCTGGATGTCCCGTGCAGTAGGCAAGCTTGGCCGGGTGATCGCATTCGAGCCCCAGCCAGAAATGAACGTAGCGATCAGCCAACTCAAGTCGATCTTCAAATGGTGTAACATGACGGTGCTCAACGTTGCGCTTTCCAGCGTCGACGGAGTGGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCGGACTGGTGATTGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //