Array 1 143214-142388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDH010000006.1 [Ruminococcus] gnavus strain BSD2780061687_150420_H1 NODE_6_length_165154_cov_40.1957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 143213 32 100.0 33 ................................ CCTGATCCAGACCGATGAGGATCACCTGTCCAT 143148 32 100.0 35 ................................ CAAAGGAGTACGATACCCTGCAGTATTCAAACAGT 143081 32 100.0 34 ................................ TATGTGTTAATATAGAAAATGCAAGGAGGAAGCA 143015 32 100.0 34 ................................ CGGAAGATTTTGTTACGGTGTAAGTAGCGACTTT 142949 32 100.0 33 ................................ TACAACTGAAACAACTATAAAAAAACTTACAGA 142884 32 100.0 36 ................................ CCGTAATGCATCTACTGAAACTCCACAGGCATTGCA 142816 32 100.0 36 ................................ ACAAATTTAATTCGCTCGGATGTGGTGTCTACTTCA 142748 32 100.0 34 ................................ TCCTTTAACGCATAATAAAAGCACCCATCTCTGG 142682 32 100.0 34 ................................ CTTGGAAGTATCTTGTGACAATCGATACACTGTT 142616 32 100.0 34 ................................ CGTACAAACGGCAGGATTCGACCATCCTCCAGCT 142550 32 100.0 34 ................................ GCGATATCATCTGCCATGCTACTGCCGCCGGAAT 142484 32 100.0 33 ................................ CAGGCGGGACTTTCGGATAATTGGATCCATTAA 142419 31 90.6 0 ........................-.G.T... | T [142390] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Left flank : ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT # Right flank : GTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATACG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //