Array 1 684674-685374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051649.1 Lactobacillus acetotolerans strain LJ49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 684674 29 100.0 32 ............................. AAAGAATTGCGCAGAGAAAACGACAAATTACG 684735 29 100.0 32 ............................. TGTCACCACCGTTAAGCGGTTTTAATCCTAGT 684796 29 96.6 32 ............................C TTGTCTATCGTGGCGCACAAGGCGATGGCTAT 684857 29 100.0 32 ............................. AGATTTCAACTTTTGAGTGATCGGCAACCTGA 684918 29 100.0 32 ............................. TCACCTGCTACTTCTGGATCAACATTGCGAAA 684979 29 100.0 33 ............................. AACGAACATCACGAGTTTCTTTATTGTTCCGTG 685041 29 100.0 32 ............................. TAATACCGTTAACTCTGCTGGTTGGTATCCAA 685102 29 100.0 33 ............................. GGTTTTCATCTGAACACGGAAAGACAGCGGTTC 685164 29 100.0 32 ............................. TGATCAGACAATTACTCAAGGTGGCGTAACTT 685225 29 100.0 32 ............................. AAAGATTTCTAGTTTTTTTGTGCTTTTTATGC 685286 29 100.0 32 ............................. ATGGCGGTGGCAACGAGAAGCTAGTTGATATC 685347 28 72.4 0 ................-CA.T..C..TAA | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AGTCTGGCAGAGTGTGTTGATGAAACATACCATTGCGATCTCGTGGCACTTGTACCTCAATTGATCCAAACTGGGTATCAATTTTACGGAAATACGCACCATTTCTAGAATTACCAGTATTCCAGCCATTTCTAGCATCAGGATCATAGCCTAAAAAGGCAGTCAGTTCAGATTCTAACAAGTCATTAACAGCTTGTTGGATTTCATGACGAAGCAAATCATTAATTTTATCTTGATTGAATAGAGCTTGAGTTATATTTTTGGTAAAATCATTCATGAAGGAGTTCTTCTTTCTGTATGTGTTTTTTGTTCAAACCAATCATACGAGAAAGGAACTCCTTTTTCTAATGTTTTAGGAAATTAAATTAGGGAATCCTTCATCCTTACACAAAATATTTTACGGTCTCATAAAAACATTTTGAATTATAATTAAAAATAAAACTATTGAAAAAATGAGTTTTTGATTTTTACAAAAGCCGGTATTATGGGATCTTTTTAGT # Right flank : AGTTAAGACATTGACGAAGCTGATGATACTTTTTAAGACATTTATCGAATTGTTTTATTCGTTAAATGTCTTTTTTGATAGCACAAATAAGCCATCACAAGATAGCCATTTCAGATTAGTTTAAGCTGCTAAACGATAAGGAAAGCCAATCACTAATTTAGCTTTTAAGCTCCGCTTATCTTTTCTTCCCGGTCTGATCGGAGTTAAATAAAATGCCATATCCAGCAATAATTGCGTGAAGGCTTTATCTGAATTATCGCTTATACCAAAATACCGCCGCCAAACACAGCAGGCCATTTTAAAGTCTATTTGATATTGATATTTTTTCTGAGAATAAGGTTTTGAGCCAGCGGCAGCTGATAAACTCACGGCGTTATACATTGCAAAGTGAGCGTATATTTCCATATAGACAAACTGATCTTGTTTAGAATGAAACTGCACTCCGCTTAAATCATATTTAAGCTCTCTAAAAGACGTTTCTATTCCCCAGCGAAGATGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 690337-691827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051649.1 Lactobacillus acetotolerans strain LJ49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 690337 28 86.2 32 AC...-G...................... CAAGATTTTGATGAAATACTATTTTGCTGAAG 690397 29 100.0 32 ............................. TGACGACTTAATTCTGACATTATCAAATGCTT 690458 29 100.0 32 ............................. AATAATGGTATTTCTTTTAGAGACTCACAAGG 690519 29 96.6 32 ............................C GACAACAGCGGAGACACGAGCAAGCCTATTGT 690580 29 96.6 32 ............................C CAACAACACCGTTATCGTCGCCTTTATCCTCA 690641 29 96.6 32 ............................C ATGCCACACGACGACAACGTCGACAGCATGGT 690702 29 100.0 32 ............................. ACATGTGATTAGCGTGTACCGACTTGATCTGT 690763 29 100.0 32 ............................. AGCGATCAACAAGCCAGTCTTGATAAAGTTCC 690824 29 100.0 32 ............................. AGCGATCAACAAGCCAGTCTTGATAAAGTTCC 690885 29 100.0 32 ............................. TAACCGGATTTATAGCAGTTTTAAGAACACCA 690946 29 100.0 32 ............................. TAACCGGATTTATAGCAGTTTTAAGAACACCA 691007 29 100.0 32 ............................. ATCACCACCAAGCTTTTGGCTTTTTCTAGTAG 691068 29 96.6 32 ............................C TAGAACCAGATAGTGAAATGATAACCTCCCAA 691129 29 100.0 32 ............................. CAACACGTGCTTGGGAATTGATTGGAAAAGCT 691190 29 100.0 32 ............................. CAGCAAAAATACAAGCGCTATGTCCATGCAGG 691251 29 96.6 32 .....T....................... ACCTGACGCTTCACCTAATCGCAATTAATGCG 691312 29 100.0 32 ............................. TACTTCCCATCTATGAATGGTATCGCAATTTG 691373 29 100.0 32 ............................. AAAAGTATCCGTGGATTTATTGCCAGTCTGCT 691434 29 100.0 32 ............................. AACCCACTTGTTGACACGGGGAGCTTAATCAA 691495 29 96.6 32 ............................C TCATCAGACTTTATCTTTAAATCCTTGATAGT 691556 29 96.6 32 ....C........................ ACATTTTTTAATAAAAAAAGCAAAAAAGTATT 691617 29 100.0 32 ............................. ATCCTTGATTTTATTGTGACGATTGGCTAAGA 691678 29 100.0 32 ............................. TAAAAAATACGATGAATTAACTAAAAAAGAAA 691739 29 100.0 32 ............................. CATGCAACGCTCGTGATTACCCGCCGATACAT 691800 28 82.8 0 ..........-...A....T......T.A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAAGGCAGTTGAGACCAATGAAGGAGACTCATTATACAAAGAAGATAACTTAGAAGATTTAGCTAAGCACTTCGATTTACCTAAGGAAACTTTGGTTAAGACTCTTACTGATTACAACAAGTTTGCTCATCAAGGCAAAGATGAAGAATTTGCCAAAGATAAAGAATCATTATTTGCAATGGATAAGGGGCCTTACTACATTGCACGATTAGATCCATCTAACTTAATTGGTGTAGGTGGTGTTGGATCAAACAGAAAATTCGAAGCTATTGACAAAGACTTTAATACTATTCCAGGTCTTTACATGGCAGGAATGGATTCCACTATGCAATATCGTAATGTTTACACCATAACTTTGGGTGGTTCCGCTTGTGCCCACAATGTAAACTCTGGTCGTCATGCAGCTATGAATGCCAAGGATTATATTGATAACTTAGACTAGTTAAAATAAGATTGAGAAAAAGAGGTGTATCAAAAATTCAATGTCTTAACTTAATG # Right flank : AAATAAATTAGCTAGATGCCTCAAATGAGGCATCTTTTTTGTTAGAAGGATTTTCTATGTAAGCGTTAAATGATAAAATAATAGGAGAGATTATAAAATGAAAAGAGAAAATAATGAGTTCTTTATCAAAAGCGGCTAAAAGTTTATGGGGCAAAAAGGCTATTAAAAATGGGCAAGAGCTTTGGCTGCCATTAATTGCTCACTTAATTGATACTAAAAATGTAATAAATTGGCTCTATAACCATTGGCTAAGTGATAAGGAACAACTAATTATTGAATCTTCTCTTCCAAATCAGAATATTCATGCTTTAGTAAAATTTCTTGGGTGTGTCCACGATTATGGTAAATGCATTCCTGCTTTTCAGGGAAAGCCTTCATATCAAAGATCTAAAGTTCTAGATCAGGATTTGCTAGAAAGATTGCTGCGACAAGGCTTAAGTAGCATTAAGTTAGTGTCGATGGAAAAATCACCTCATGCGGTAGCAGGGGAAGCTTTACTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 701296-702605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051649.1 Lactobacillus acetotolerans strain LJ49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 701296 29 100.0 32 ............................. CCAGTTATCATCGATTGCAAGTTAGTTACATC 701357 29 100.0 32 ............................. AGCTAAAACTAATCTGAACGGATTACTGTGCA 701418 29 100.0 32 ............................. TAAACCAATTAGTTGAAAATACTGATAATACT 701479 29 100.0 32 ............................. TACTGACATCGGTTCGTCTAATCGCTGAGAGT 701540 29 96.6 32 ............................C GAGCAACTTCCTAGTCCTAAGACTGGCTTGCC 701601 29 100.0 32 ............................. ATTTTGTATAACTTCTGGTGTCTACTTTGACA 701662 29 100.0 32 ............................. AACATGATCAATTTCAATCGCATTAATGATGA 701723 29 100.0 33 ............................. TAGAAAGAAAAAGGTAAAGCAGGAAATTGCTTA 701785 29 96.6 32 ............................C ACCATTGGTGGCATTGTCAAAGCATGGAATGA 701846 29 100.0 32 ............................. AAGGAAAAGCAAGAGGATTACTAATGGATAAG 701907 29 100.0 32 ............................. GATGTATCCTCACAAGTGCCTTTTCATAATTA 701968 29 100.0 32 ............................. ACAAGAACATCATATTTTATGAAAAGACATGG 702029 29 100.0 32 ............................. AGACACTGCAAAAGTTATGTCCGGCGGTTTGG 702090 29 100.0 32 ............................. ATTCAGAACATCCTAAGACTGATGCTGAGAAG 702151 29 100.0 32 ............................. TAGCATTGCAGCAAATGGTACCTCATTTGTAC 702212 29 100.0 32 ............................. AAGACAGCCTCGTGCTTCTAATTGCTTAACCG 702273 29 100.0 32 ............................. ATCGGTATGGATGCGGACGAACTTTTGAGATT 702334 29 100.0 32 ............................. ATGGGACTACTATGAAGATGTTCCAAAAAGGA 702395 29 100.0 32 ............................. TAGCATTGCAGCAAATGGTACCTCATTTGTAC 702456 29 100.0 32 ............................. ACCGCATCAGGGCGTTCTTCTCGCAGGTCGGC 702517 29 96.6 32 ............................C AGCCTTTTCGATAGCACCGTTAATTTGGTTAA 702578 28 75.9 0 .................AT.-T...CTG. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTGATGAAGATAAAATTTTGTCGATTGGAGCAATTAAGATTTATCATAATGTAGTTTCTAAATTCTACCGCGAAATTAAGGTGGATTGTCAAATTCCAAGTAGTATTTCAAGGTTGACGGGTCTTACAAATTCTATCTTAGATAAAAGTGGAGTTCGCTTAGATCAGGTTTTAAAAGAATTCATGAAATTTATTAAAGGACTCCCATTAGTAGGTTATAATGTCAATTTTGATATTGATTTTTTAGAAAAAGCTCTAAATGATGAATTGAGTCTAAGTATTAATAACCAAGTTATTGATCTAATGAGTCTAGTCAAGAAAAAAGAAAAATTTTTAAATGACTATAAGTTGAAGACTGTTTTACAGCATTACGGTATTAAAAATAAAAGACCACATGAGGCTCTGTCTGATGCAAGAGCAACTTATGAATTGGCTTTAAAACTGTTGAAAAATGGTGTTTTGCAATTTTGAGAAAAGCTTTGTATCAAGGATTTTTTAGT # Right flank : TATTTTTACAGGTCAGTTAGTAGATTTACCGACAATAGCTAAAGAGACTAATAATTTAATTATTACCGCACAACACATGGATTCTTTAAAGCCAGGTAGAGGCATGGGTCATGTTTTACCAGAAGCTCTTGGTCATGTAGGAATTAAAGCCGTCGTTTTGAATCATGCTGAAAAGCCTCTGACGATTGCAGAATTAGATGCAACTGTTAAGAGGGCAAAGGAAGTTGGGTTAGCTACTATCGTTTGCTCAGATACAGTTGAACAATGCCGTGCAATTGCTGAATTAAATCCCGATGTCATGATTTGTGAGCCTGATAGTTTAATTGGTACGGGGAATAGCAGTAATGAAGATTATATTAAATCGACAACAGCTGCTGTTCGTTCAGTGAATCCCAATATTTTAATTATGCAGGCAGCTGGCGTAAGTACCGGTCAAGACGTTGAAAAAATTATGCAACTTGGTGCTGATGGCACCGGTGGAACTAGTGGCATTATTAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 706621-707316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051649.1 Lactobacillus acetotolerans strain LJ49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 706621 36 94.4 30 ...................A..............A. GACTTCCTCGCACTGATATGCGTGTGATGG 706687 36 94.4 30 ...................A..............A. GACTTCCTCGCACTGATATGCGTGTGATGG 706753 36 94.4 30 ...................A..............A. TCCAACCACGGAAACAAATAGCTACACTAG 706819 36 100.0 30 .................................... TGCGGCTCTCTCCAATGTGGATGAGTATAC 706885 36 100.0 30 .................................... TTTCCTTTTCGAATCCCTCCAAGTTCTTTA 706951 36 97.2 30 ........................T........... GATTAGCTGCACTTGTATGTTTCTTAACTG 707017 36 100.0 30 .................................... AGTGTACCCACTTACTATAATAGGTAGCAA 707083 36 100.0 30 .................................... GGTAAACAAAATGATTATTAAAGATCAAGC 707149 36 100.0 30 .................................... TTCTTTGGAACAAGAAAATGAAAATATGAA 707215 36 97.2 30 ..................................A. GTATCAAAGCTACGCTTGACACTCGTTACG 707281 36 83.3 0 ..................T....G.GCT......A. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 96.4 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Left flank : ATTTGGTGGACAACAAGTATTTAAGGGTAAGCACTACACCAATTATGGTGTTGCAGCCGCTGCAGTTCGCTTAATTCAATCAATTCTTAATGATTCTAGAACTGAATTGCCAGTTTCAAGCTATCAAGCTAAATACGGTACTTATATGTCATATCCTTCAATTGTTGGTCGTGACGGTATTGTTCAATCAATTGACCTGCCATTAACCGATGAAGAAGAAAAACAATTAAAGGCTTCTGCTGAAACAATTAAAGCAAAGTCTGAAGCTTAATTAAGAATAATATTAAGTATATTTAGAAATAGATGGGTTTATAAAGCTCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACGTTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAACCTTATTTGATTGTGACAGTTTTTATTAAAAATTAATGATAAAATATCG # Right flank : CGTACGTAGCAAAACCAATATGGCGGACTTAATTTTAGATATCTGTTAGATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTCTTTTAAAATTCTTAACTTTTCTTTTAAAATTCGTTTTACTGACTGGTCAATTTGCTTTTCTGATATCTCTTTATTTTTAACTGCTTGTTAATTGCTGGAATTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATAATTACCTGCTTTTAGAGCTAAAATATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTATAATTGCACCCATTTGAAGATCATCAGAAATAATTAAGCCATTGTAATCCAATCTTCTACGTAAAAGTTTATGAACTGTAGATGAAAGGGATGCAGGTAGCTTAGGATCCATGTTTTAATAATAATGTGTGGGACCATGATACCATCTGCGCCAGCTTCAATACCAGCTTTAAAGGGCAACAGATCTTCGCATTCATAATCTTTAGGAGATTT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Alternate repeat : GTTTTAGATGATTGTTAGAACAATGAGGTTTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //