Array 1 162531-162015 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLVR01000006.1 Escherichia coli strain MOD1-EC6525 MOD1-EC6525_6_length_171442_cov_47.7595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162530 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 162469 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 162408 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 162347 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 162286 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 162225 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 162165 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 162104 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 162043 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93711-94959 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLVR01000019.1 Escherichia coli strain MOD1-EC6525 MOD1-EC6525_19_length_95132_cov_42.0437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93711 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 93772 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 93833 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 93894 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 93955 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 94016 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 94077 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 94138 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 94199 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 94260 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 94321 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 94382 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 94443 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 94504 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 94565 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 94626 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 94687 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 94748 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 94809 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 94870 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 94931 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //