Array 1 38-1531 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLK01000005.1 Rhodovulum sp. 12E13 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 100.0 32 ............................. CAGGATGGCAGTTTTCGACCGGATCAGGGCGT 99 29 100.0 32 ............................. TCGAGCGCCCACCGATGGGCGAGTAGCTCGCT 160 29 100.0 32 ............................. CTCGCCGACCTCGCCCGCGCCTACGTTGAGGC 221 29 100.0 32 ............................. CTTCAAGCTCGCCGGCTGGAACCCGCAGGTGC 282 29 100.0 32 ............................. TCGCGCAGGCGCAGATTGCCCAACAGCAAGAC 343 29 100.0 32 ............................. CCGTTTGGAGCTATACGAAAAACGCTGCTTAC 404 29 100.0 32 ............................. GTGTATGGATCGGCAGGCGGATCCTGCTCCCA 465 29 100.0 32 ............................. CATCCGCCAGGGCACGCTGGACGAGCGCGAGC 526 29 100.0 32 ............................. GCACGGGCGCGGTGAGCGTCGGTGGTCCGGTG 587 29 100.0 33 ............................. ATGCCGACATCGTGACCAAGGGTCGGCTCGTGC 649 29 100.0 32 ............................. CGTCAGCGACGATGCCCTGTGGATCGTAGTCG 710 29 100.0 32 ............................. GAGGGGTGCCGGTTCCAGATCGGAGCACCGCG 771 29 100.0 32 ............................. CCTATGACCACCGACACCCAACCGCTCGATCT 832 29 100.0 32 ............................. GTGGTGGTCCGGTCGGCGTTCGCGCTTGCGGG 893 29 100.0 32 ............................. ACGGTCCGCGACGCGCCGTAGCGGAAGCGATG 954 29 100.0 32 ............................. AGCGGCACCACGGTGTCGATTTCGTCAGCGGC 1015 29 100.0 32 ............................. CGGCAGGGTGTCGAGGTCACGGACAGCTTGCG 1076 29 100.0 32 ............................. CCAGCGCCGGGATGTTCATGCGGTCGAGGATC 1137 29 100.0 32 ............................. GCGCTCGATAGCGTGGCTTCGCAGAACGTCGA 1198 29 100.0 32 ............................. CGCTGAAGCAGTATCGCCGCGAGTTCAACGAA 1259 29 100.0 32 ............................. CTCTTGATGGATGACGACCGCAGCCGGGACGA 1320 29 100.0 32 ............................. GCGTAGGCCCGGGGGAAGCTCTCCGCGGTCTC 1381 29 100.0 32 ............................. CAGGATGGCAGTTTTCGACCGGATCAGGGCGT 1442 29 100.0 32 ............................. GCCAGTCCTACGCTGCTTGGTGCAACCTCATG 1503 29 89.7 0 ...................C......A.A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 CCGTTCCCCGCCCGCGCGGGGATGACCCG # Left flank : ACCCGGCGTAGGCCCGGGGGAAGCTCTCCGCGGTCTCC # Right flank : ACTCGCGACGATGGTTGTCTCGCGCGCCGCCTGCCCGGCATCCCGGAGCAACCGGGCCCCGCCCTCAAGGCGGGGCGCGCAAAATCAATAACTTAGCGGGCTCTTTGAAATTTTGTCATGGTGAGAATGGGCATTTTTGCGGGATAATGGGCGAATTGGGGCTCGCGTGACAAAACAACTAACAAAATTCACCCAGAACAGGAGGAATATCCGCAATTGCGGCAGGTCATGCAGCCTTCGATCATGGCCATCTCGTGCTGGCCGCAGGCGGGGCAGGCGGGGCCGGGGGTGGCGGCGCCGATGACGGCGCGTTCGGCCTCGGGGTCGGGCTGCAGGCCGAGGCCCCCTTCCTGCATGAAGCCGATCGAGACGAGGTGGCGCTCGATCACGCCACCGATCGCGGCGAGGATGGAGGGGACGTACTTGCCGCCCATCCAGGCACCGCCGCGGGGGTCGAACACGGCCTTCAGTTCCTCGACCACGAAGCTCACGTCGCCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCCCGCGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCACGCGCGGGGATGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 762-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLK01000061.1 Rhodovulum sp. 12E13 Scaffold61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 761 29 100.0 32 ............................. CAAACAGAAGCCGTGTCCCGCGCGGATACCGC 700 29 100.0 32 ............................. TCGGCACTGATGCAAACGTCAACGCATCGGGT 639 29 100.0 32 ............................. CTCGTCCTCGGGTATCAGCCCCGTTTCGCTGG 578 29 100.0 32 ............................. TCACGCACGCCGGTATGCTTCTGCCCGTCCGT 517 29 100.0 32 ............................. AGCGAACAGGAACCGCTCGGCCGTGACCATGA 456 29 100.0 32 ............................. GTGGCGCGGTTCAATCCAGCAGGCGTGGCGGC 395 29 100.0 32 ............................. GCACCACCCCCGCCCATCGTTCCCAGCCGCAG 334 29 100.0 32 ............................. CTGTCTATTCTCGCTGAGGCTCGAATAGCCAG 273 29 100.0 32 ............................. GCAATCGACGCGGGCATCGCGCCGAACAGCGC 212 29 100.0 32 ............................. CCCAGGCAGAGGATGGGCCGGTCATTGGCCAC 151 29 100.0 32 ............................. CCTCACTGACGACCACCACCGACAGCACAGGA 90 29 100.0 32 ............................. GTGAGACAGCGCGGCCTGACGACGCTCATCAG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 CCGTTCCCCGCCCGCGCGGGGATGACCCG # Left flank : TCAGGAAGAGTGGGCTTCTGGACCACATCGTGCCAACGATCGAGGAAGTCCTCTCTGCTGGAAATCTGCCCAAGCCGGAGCCACCGCCCGACGCGGTCGGCCCAGCCTTTCGCGACGAGGTGTCCGGCGATGATGGTCATCGTGGTTAATCGCGCTCCGCCCCGCCTTCGGGGGCGTCTGGCCGCATGGTGTCTGGAGGTTCGGGCGGGCGTCTTCGTCGGCGCCTATTCGGCTCGCACACGCAAACGGATCTGGGAGCAGGTCCTTTCAGGGATCGACGACGGCGACGCGGTGATGATCTGGCGCGCGCCGACGGATCAGGGCTTCGACTTCGCCACCGCCGGCCGGAACCGCCGAATGCCCGAGGACGTCGACGGTCTCAGACTCGTTCGCTTCTTCCCCCCGAACGGCGAGGCAGGTTAACCTCCGCCAAGGCCGGACAATCCGGTAGGCTCTTTGACATCGTGAATACCTCGGTACATCAACGGGATGCAGCAAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCCCGCGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCACGCGCGGGGATGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //