Array 1 22998-23561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000002.1 Streptomyces lonarensis strain NCL716 NODE_2_length_84365_cov_114.767521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22998 30 90.0 36 T......G.C.................... AGGAGCTGGAGGAAGTCGGCACGGTCTTCCGCAAGG GA,A [23001,23005] 23067 30 100.0 39 .............................. GGTCGGACGCGGCGTCCTTCCCGCAGCGGATCGTCACCG 23136 30 100.0 37 .............................. CCGGTGAGGGCGGGGACGTCAACGTGCTTGACGTCTT 23203 30 100.0 34 .............................. CCGGCCGAGCCAACAGCCAGCGCGATGAAGAGCA 23267 30 100.0 36 .............................. ACGGAGACGATCCCGCCGCAGGGGCAGAGCTTCCGG 23333 30 100.0 36 .............................. GTGACGGCGACGGAGACGCCAGCGGACTTGCCGCTG 23399 30 100.0 39 .............................. CAGATGTGCCCGAGGACATCCGAGAGGATCAGGGCGGTG 23468 30 100.0 34 .............................. GCGCCCGTCGATCATGCACCGTGCGGTGCCTGCG 23532 30 93.3 0 ......................A.....G. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 98.1 36 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CGTGAAAAGAGAGTCGTGAACGTGCACTATCGACGATCTGGAGGGCCGCAGACGGATGACCCGCGCCCTCACTGGGCGCCAGGTCGTCTGACCGTGACGACGGCACAGCAAAACACGCTCGTCGTCGTCGATCACGACCAGCGCTGTGGAGTTCTTGCTCCGAAGGGCCTGTCTCATGTGCCGAGAATCGGTCAGCGCTTGTATCTCGGCCACCACTGGGTTTCCAGGCGAATGAAACCGATAAGGCGGACTGGTTCCCTGAGTTGAAGCGGAGCGATGCAACAGCTTCCTGGTGGGCTGCGCTCAGACCCTGGCCCGAACCCACTGCATCACAGAGGTGCCGGTGCTCGGCAGAGAGCGAAGGGGCGTGCGCATCAGAGTCGATGTCGACGGGCTGAGTCACCGCACCTGACCAGTGCAGATGGCCTTGGCGTTCCCGGATCACCCTCGGTGCGTTTCGGCCGCGATGCGCGCACCCGCTGTGATCTGCGGCGGAACAC # Right flank : CCCGCCGAGGGCAGGCCGCCGGTTCACGGCGCCAGGCTCTGGGCCTTTTCGGCAGACAGGTGAAGCGCGTTGCCCCGGAGGCACGTGGCTCGTTCACCGGTCATGAAGAAGATCATCGCCTCTGCCGCACTTGCCGTGGGAAGCCTCGCCCTTGCTGCACCGGCCCACGCGGACAACGATTCCAACTTCGGTGAGGGTGTCAACGCCGCCAACAATTGGAACTTCACTGCGGCGGCTGTCTGCCTGCAGGAGGTAGCAGTCGTCCCCGTTCTGGGGGACTACGTAAGTGACCACGTCAACAACTGCTCGAACGGAAACGTCATCGACCACTCGGGGCGGTGACGCCGTGCCTCCGGTTCGAGAGCCGAGCCTGCCTCGGGCCGGAGGCCCCGGTCAGCCGGGTCGGCGTAGCCCGCTGTCAGCGCGCCGACGCTCCCGCCAGGTCTCGTCCAGGTGGGCACTCGACGAGTCGGAGACGGGCCGAGGCCCAGGACAACGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 3507-3839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000030.1 Streptomyces lonarensis strain NCL716 NODE_30_length_36330_cov_102.670828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3507 29 100.0 32 ............................. GAGCCCAAGCCCTCGCCGCCTGCGGCAGCTTC 3568 29 100.0 33 ............................. GACGACGCCGGCGAGGTGGGTGCCCGCGGAGTT 3630 29 100.0 32 ............................. GACCGCACGCGCGAGTCCTCCGCGCCGCTCGA 3691 29 100.0 32 ............................. GAACGGGGTACCGCCCTCGCCGACCAGCTCCA 3752 29 100.0 32 ............................. CTGACCGCCACCCTTGCCGAGCTGCACGTCAT 3813 27 86.2 0 .................--....TC.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : CCCAGACCACGTAGTCGCCCTGCTCGGCCAGAACCACGCTCTGCCCGGGCAGCTCCACCCGGAACCGGCCGCTGATCAACACCAGCAGCGCCGTCCGCTCCTCGCCGCGCACCCACTCCGCCCGCTCGTCGCCGGGCGGGTGCACGCCCCACTTGATCTCCAGTGCGTCACTGTGACGGGGGTCGCCGGGCTCCTTGAAGTGCCCCAGCAGCCAGCCCCGGTCCAACGGCGCGTCCTTGCCGGCGTTCCCCACGTACACGGTGTCGTTCATACGACCGGATGCTAGACGGCCACCGCCACGGCACGGGCAGCGCTGCGCCTCTGCTCGCCGGGTTCCCGGCACCCGCACGTCGGCGGCGCAGAACCGGTACGGTCCTGCTGTGGACCGGACACCGCACGGCTCGGGAGAAGGCGAGAGGGTGCTTATGGGGCAAATGCCGGATTTTGGCAAAGTAAGTAAAATCCAGCTTGCCGCCGCCTAACGCCCCAGGTCGCGCACT # Right flank : CACCCGATGTCTGCCATGCAAAGCCACATGTCCACGCCTCACTGTGCAGGAGGGAAGGGGCGAACCGCGTTGGGTGGTGGTGTGGCCCGTGGAAGCGAGGGTCCGAAGCAGCAAGGCAGGCGGCGGCAGTGCTCGATCAGGGGCAGTAGTCAGTCTGGACGCCCGAGACCTCGGTCTCTGAAAAGGGCGGCTACCTCTGGCACATCCGCGAAGGGGCGCAGGTGATGCAGTATCACGCGAACTCTGCCGCTGGTTCGGGCAGACGCGATGCACTGCGAGATATCGAGGGCGCGTCGTGCGACATCCGCCGCTTCATCCGGTTCGTTGGCATCGGTGAGGGCCACCGCGAGCCAGGAGAGGTAGAGGGCAAGTTCGCGCGTGTGCGTCACGTTGTACCTGGCGAGCACGTCGCGCAGCAGGGGCACCGCGCGCAATGGCCTGCGCAGCTCGGTGTAGCAGCGTGCCTCCATGATCTTCAGCTCATCCGCGTTCATCCAGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25039-23666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000043.1 Streptomyces lonarensis strain NCL716 NODE_43_length_30949_cov_91.762197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 25038 29 96.6 34 ............................G CTTCCGGTGCAGGCTGCCGTACCCGCGCTGAGCT 24975 29 100.0 32 ............................. GCTACACACAAGACGCTACGTGACGCAACCGT 24914 29 100.0 32 ............................. GCGAAGCTGGACCGCCTCACGTCACCGCGCTG 24853 29 100.0 32 ............................. GCGGCGTTCGACGCGCTGCTGGGCCGCCCGGA 24792 29 100.0 32 ............................. AAGGCCACGGGCGCCCGTATGACCCGCTGCAA 24731 29 100.0 32 ............................. AGCGCTTCCCCCAGCGTCATCTGGAGGGTCCG 24670 29 100.0 32 ............................. ATCTCGGCGATGTGGGTGACGGTGAGATGGTC 24609 29 96.6 32 ............................T GCCGTCGGCCAGCCACGCCACCATGCCGTTGA 24548 29 100.0 32 ............................. GGGTTGACCGTTCTCGTCGAGCGGGATCTCCA 24487 29 100.0 32 ............................. TACTGGCGGATGATGCACCGGGCGGACGGTGG 24426 29 100.0 32 ............................. ACGTCGCCGAAGAGCCCGCCGATGGCCGCGAG 24365 28 96.6 33 .....................-....... TCGGACGCCCATGACGCCCAGGAACTCCCCGCT 24304 29 100.0 32 ............................. TGGACCGCATGGCGCCGATCCGCGGTGAGCTG 24243 29 100.0 32 ............................. CACGCGGCGGACCCCGGCGGGGATCGGGTCCC 24182 29 96.6 32 ........G.................... GACGACGAGTACGACGACGTCGCGGACATGCA 24121 29 100.0 32 ............................. GCGGCCGGCGGGTGGGCCGCCGGGGCCACCAC 24060 29 100.0 32 ............................. GTCGCGCGCCCAGTCCTCATCCGAGCGGTGCC 23999 29 96.6 32 ..............C.............. CCATGGTGGCGACGAGCAGCCCCCACCCGAGC 23938 29 100.0 32 ............................. ACGGAAGGGGAGCGAAATAGTGGTCAACTCGT 23877 29 96.6 32 ......................C...... GCGCAGGTCGTCCCGCAAATCCCCCGGGGTCC 23816 29 100.0 32 ............................. CGACCCGCCGGGCCGAACTCGTCATCCGCCAC 23755 29 100.0 32 ............................. CAGTGACGCGCGGGTAGGCGCTGGCGTCGTCG 23694 29 93.1 0 ............T....A........... | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.8 32 CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : CGCCGCTGTCACGCGGCCGGGTCCTGGTCTGCGGCGACGCGGCGGGACTGCTGGAGCCGTGGACCCGGGAGGGCATCTCCTTCGCGCTGCGCTCGGGACGACTGGCGGGGGAGTGGGCGGTGCGCATCGCCGAGGCCGGGGACGCGGTCGACGCCCGCCGGCAGGCGCTCAACTACACCTTCGCGGTGAAGTCGGGGCTCGGCGCCGAGATGGGTGTCGGACGGCGCCTGCTCGACATGTTCACCCGCCGCCCCCGCCTGGTGCACTCGGCGCTCATCGGCTTCCGCCCGGCATGGACTGCGTTCACCCAGATCACCCGGGGCTCCAACACCCTCGCCGGCATCGTCCGCACCTCGCCGGTGGCCCGCAAGGTCCTCGAACTGCGGGACCGGCCGTGAGAGGGAGAGGCAGGAAAGGGGTGAGGGATGGGCGAAATGCCGGAGTTTGGTAAAGTGAGTAAAATCCGGGCTCGGCGCCGATAACGTCGCAGGTCGCGCACT # Right flank : GCCCTTGTGTGCGAATAAGCTGATTCCAGCCCCCCTGGTGGGTTGTGTGATTGGGCTGATAACGGGGTGAAGCCCCTGGTAGGCGGGTTCACGACCAAGATCGCCCGTTCCACCAGAGGCTTCACATGCTTGCCTACCCGCCCGGTGACGACGTGTCCAGCTCCACCATGCGCTTCCTTGCGCAGCAGCTGCGCCGTCGTCGCGGAGCGATCGGCTCCTGGTTGTGAAGGCTCAGCGCAGGTCGTCAGGCTCTGCCCCCGGGCCACCGCATATCACCTACTGACCGTGTTCACTTGCCGGGCGATTGCTGCGCGCGGACCCTCAGTCCGAACTCCTGAGGCGTAAGCCCGAGGCGCGCCGTTTCTTCGATAGCCTGATGCAGCTTGCCAGTCATCGTGGCAACCTCGACGTAGGCGCCCTCGAGCTCGGGAGTTGTATAGAGGCGGCACAGATCCTCGTATCCGATTCGATATCCGAACCACCTGCCCAGCTGCAGCAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16240-16451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000050.1 Streptomyces lonarensis strain NCL716 NODE_50_length_27407_cov_106.736861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16240 29 100.0 32 ............................. GGCACGGGCAGGCTCATCCTGCTCGCCATCGC 16301 29 100.0 32 ............................. AGAAGATCAGCCCACAGCTGCAAATGGAAGCG 16362 29 100.0 32 ............................. CAGGAGCTGATGACTGTGATCACCGTACCCAC 16423 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : CTCTACTGGGCGCAGGAGCTGGCGAAGCAGACCGAGGACGCCGCGCTGGCGACCGCCTTCGGCCCGCTCGCCGAGACCCTGTCGCAGCAGGAGGAGACCATCGTGGCCGAACTGGCCGCGGTGCAGGGCCACGCCGCGGACATCGGCGGCTACTACCAGCCCGACTTCGACAAGGCCACCGCCGTGATGCGCCCGTCGAAGACCTTCAACGACGCGCTGGCCACCCTCGGCTGACGCGGGTGGGGGTGGCGGGGCGGGGGCTTGCTCTCCGGCCCCGCCGCCCCGCACCACCGTTCCACCGCTCCACCGCCGACGGCGGGGAAGGCACCCCGACAGGGACCGCCTCCCCCCGCCGTCGGCGCGTGCGGGCGGGGGTGCGAGCGGGGCGCTGCCGAAGGCAGCGGACGCGGGCGCGTCGACTCTGACAAGATGCCGCCATGACCTCCGCGACCGACAGCAAAGGATTTGCAAAGCCCCTCTAACACCCCAGGTCGCGAAGG # Right flank : GCACCCCCGGTCGGGAGGGCGTCCGGTGCGCCGAACGCTCCCCGCCTGGCAGCTGCTGCCTCATGCGTCGCGGCACACGTTTCCGCGGGGGGCTTGGCGACGCGCAGTACCAAGGCTGTCGGCGCGATACCACGGGTTGACCGTTCGCCGAAGTGGACAGGCTGTTCGTGTTGAACGGGGGCCGATTACGCGCACGAAAGATCGGCAAGGAGGTCGCTTTGCCAGTCCCATACCGTGGCCTGATCCTCGACTTCGGCGGCGTGCTCACCACGCGAATGCGATTGAACGGGCGGGCGTTCGAGCGAGCAGAGGGGTTGACCCCGGGCGCGTATTCTGCGGCGCTTACTGAACATCCCGATGGCGTTGCGGTCTACGCCGCGCTGGAGGTCGGTGAGGCAACGCAGGAAGACTGGAACCGAGTCATCGGCGGCATCCTCTGCATCGACCCGACCGACCTGATGCGGCGCGCCCTGGCCAATCTGCACCCGGAGCCTCAGATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20559-20952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000050.1 Streptomyces lonarensis strain NCL716 NODE_50_length_27407_cov_106.736861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20559 29 100.0 32 ............................. GCCGCGCACGCGGTTCGGGACGGCCGGCTGTA 20620 29 100.0 32 ............................. TGGCGGGTGTGGTGACTCCGGGCTCGCCGCCG 20681 29 100.0 32 ............................. GTGCCGGTCTCTCCTACCGAGAGACCCAGCAG 20742 29 100.0 32 ............................. GAGCCGCGCAAGGTCGGCACGAAGCCGGAGCA 20803 29 100.0 32 ............................. ATGTCCCATGTCTCCGTGTGACCACACGCGTG 20864 29 96.6 32 ........................A.... GAGGAGCTGGACCCGCCGTGGGTGCTCACCAG 20925 28 86.2 0 .....................-C..C.T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : ATAACGCTCTCACCGCCGGTCACTCCAGAGCAGCCCCGGCGGCCCTGGTGGCGGCGCCACCGCCGCTGACCCGCCCGCACCCGAGCCGCCGCAGCAGCTCCTCCACCCCGCCCCGGGCTCTCCGGCCACGGCGGCCACATTCCCGCGCCGGCCGAGGTGACCACCACCCGGCTCCCCCGCTGCCCCTCGGCCGGCGCGGCACCACCCGCCCCAGGGCACGCCCGTCACGACGACAGCGACGACCTCACGAAGTGACCGCCGGAAAGCACCCGTGCACGCCACCGGAACCCCGGGCCACGCATGTTTCCGGACTTGCGCCCTGGAGCGCACCACTGATCTGAACTCAACACGCGAGGCCCCCGTTTGCGGCGAACGGCGCGCACCGCCCGCGGAGTGAAGCGCCGCGGACTGCCCAGCGCCTCTGGCAAGATGCCGGTATGACCCGATCGATCGATGGCAAAGGATTTGCAAAGCCCTCCTAACGCCCCAGGTCGCGAAGG # Right flank : GAGGAGGGGCCTGCGGGCCTGGTCTTCTCTGCGCCAACGGCGGAGCGGTAGGCCGCAGGTGCTATGCGGTGGGCGTGGGGGCAGGGCCGTCGGCTTGTAGGACGACAGCAGTTCCAGAGATGGTTCGGTCTTCATGCATGGTGATCGTTCGGCCGGGCTGAAGGTGCCGCCACTGCGAGGGGTCAAGGGGAGCGAGTCGCACCGAGGTTCGTTCGCCGGGGCCCAGGAAGGGTGCGTACTCGACCCAGACGCGCGCGATGTCGAGGGTCGGTTCGCCGGTCGGGGTTCGGTTTCCGATGCTCCACATCGGCCGGAGAACGCCGGCTCCGGAGAAGGAGGTCTGCCGTCGGCCCTCGTAGGCCGGTCGGACTGTGAGGTCAGCTCGGATGATCCCGTCGCGGAGTTCATTGCAGCGCCAGTGGCACCAAGCGGCACTGTTCGTCAACTGCATCTGCTCAGCGGCCGCGGCCAGCATCTTCCAGAAGCTGAGCGGAAGCGGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5218-5856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000065.1 Streptomyces lonarensis strain NCL716 NODE_65_length_24012_cov_84.735968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5218 29 100.0 32 ............................. GGCACGTGGAGTGTGCGGAACGTCGAGGTTGT 5279 29 100.0 32 ............................. GCGGCGCTCAGGACGCCGAGGTCTTCGAGTGC 5340 29 100.0 32 ............................. GAGCTGGCGCAGGCGCTCGGCATGTCGCGCGA 5401 29 100.0 32 ............................. CAGTCGATGATGCCGTTGACCAGGTCGGGGAT 5462 29 96.6 33 ............................A CGGCCCGCCCCCACACCCGGGGGCCGGGCCCGA 5524 29 100.0 32 ............................. AACAACACGCCGCGGAAGACGCGCGGGCTGCT 5585 29 100.0 32 ............................. GTCTCCTCGCCGCGGGCGGCCTGGTCGGTCTT 5646 29 100.0 32 ............................. ACCAAGCGGTACGGCGAGCACACGTGGGTACG 5707 29 100.0 32 ............................. GCCGGCGCGGCGAACACGACGGTGGCGCCCTC 5768 29 100.0 32 ............................. TGGATCAGCGACCCGCTGATGCACGAGGCGGA 5829 28 86.2 0 .............G.........-A...G | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 CTGCTCCCCGCACACGCGGGGGTGTTCCC # Left flank : CGGCACCTCGGCGGCCTGGCCCGCGTCTGGCTCACCGAACGCGGGGCCGCCGACGTGCCGCCGCCGTCCGAGGAGCTGATCTTCTGGCTCACGGTCGACACCCTCGCCGCCCAGCTCGACAACGAGGACCCGGCCGGGCTGCGTGAGTTGGTGAGCGGACTCTCCGCGCAGCACAGCAGCTTCTTCGAGCACGCCTGGCAGGTGGACCACCCGGCCACCACCGATGTGCTGGAGGCCGTGGGGCGCCTGCACCCGGACGAGTCGCTGGCCAAGGAGGCCCGCGCCGCCGCCGAACGCGCCCGCAGCCGCACCACCGACTGACCCCGCGCAGCGCCGCATCCCGACCGCGCCGCCCCAGGACCGGGTACCGAGTCCCACTGGGGCGGCGCGGTGGCGGTGGCGGTTGGCTGGCGCGGGGGAGAGGAATGGGAGAAATGCCGGAGTTTGGCAAAGTAAGTAAAATCCTGTTACTCACCAGTTAACGCCCCAGGTCACGCACT # Right flank : GTGACCCCTTTTGGTGCGGCGGAGCCCCGTCGTGCGCGATGTGCGCGGCGGGGCTCCGGGTGGCGCGAGTGCTCAGGTGAGGGTCGAACCCGCTTTGAGTCTGTCCACGAACGCGGCGAAAGCGTTGGTAGGGATCGCCAGGCTGGGTCCGGCGGGGTTCTTGGAGTCGCGGACGGGGACCTGGCCGTGTGAGGTGGCGACGTTGGTGGCGACCTCGATGCACTGGCCGCCGTTGGAACCGCTGTAGGACGACGTGAGCCACACTGGGGCGCCGTCGAGGCCGTTACTCATGCGTGTACTCCTTGTGCAACCGCTGGATCAGGGCAACCGATTCATCGGGGGCCATCGCGTGCGCCCTCAGCCGCTCATAGCTCTGGAGGGCGGCTGCGACGCTGGCCGCTCTGTCATAGAGCCTGCCTCCTTCCGGATCGTCTGAGTAGAGGACGGTCGGCGAAGCCTCGAAGGTAAGCAGAGTGAACGGGAGTACTTGAGACGCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4745-7041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000060.1 Streptomyces lonarensis strain NCL716 NODE_60_length_25566_cov_99.853056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 4745 29 100.0 32 ............................. TGGCACGCGCTGGTCTCGCACTCCGCGCCGTC 4806 29 100.0 32 ............................. GCGCTGCGCGAGCAGCGCAGGACCTGGCCGGA 4867 29 100.0 32 ............................. GGCGGGTGGCTCGGCATCCTTAAGCCCGGTGT 4928 29 100.0 32 ............................. GGAGGGGCACGCCATGGCCACAGCCGCCCGCG 4989 29 100.0 40 ............................. GCGGCCCGGGATGCAGCCCGCGGGGCACTCAACGCGGCGA 5058 29 100.0 32 ............................. ACGGACGGCAAGGGCAAGCGACCCCAGGCGCC 5119 29 100.0 32 ............................. GCGGAGCCGATTGACGGGCCCGGCCGGGCGCC 5180 29 100.0 32 ............................. TGGCCGTCCTTCAGGCCGTCGGCCGCGCCGAC 5241 29 100.0 32 ............................. GCCGGACAGGCGGCCGACGGTCACCAGCAGGT 5302 29 96.6 33 ............................A ACGCGACGCGCTCGTGCGCGAGCCCCGGACTTG 5364 29 100.0 32 ............................. GAGGCGGACGACCTCCTCGACACGTTCAGCGA 5425 29 96.6 32 ............................A ACCCCGGTCCCGACCCCAAGCGGGTCCGGGCC 5486 29 100.0 32 ............................. GCGCGCAGCTGCTCGGCGGTCGCGGCCGAGGC 5547 29 100.0 32 ............................. GCCCCAGCGGGACAGGGTGCCGCTGGCGGAGT 5608 29 100.0 32 ............................. AGGCGGATGCGGGAGATCCTGGACGAGCTCAC 5669 29 100.0 32 ............................. CTCAGGATTCGGTCCGTCCCGAGATGGCCCGC 5730 29 100.0 32 ............................. GAGGCCGCGGGTCTCGCGGTCCGGGCCGGTGC 5791 29 100.0 32 ............................. GTCACCGACGCCGACCTCGACACCGCCGCGGC 5852 29 96.6 32 ............................G AGCCGCTTCGTACCGGGCCTCATGCTCGTCCG 5913 29 100.0 32 ............................. GACATCGAGAAGCGCCAGGCGCTCAACGGCGG 5974 29 100.0 32 ............................. TGCACCGGGCCGCGAGTGCCGGTGAAAGGCGA 6035 29 100.0 32 ............................. TGCTACTTCCGTAGCGGCGTGTCCGGCGCACA 6096 29 100.0 32 ............................. ACGGGCACTCCCGGGTACGTGGATCTGACGCA 6157 29 100.0 32 ............................. GGCACCGGGACCCCCACCCCCGGGGCCGTTGC 6218 29 100.0 32 ............................. GCCGGCTGCCCGATGACTCGCTTGGACCGGTC 6279 29 100.0 32 ............................. CCCCGCCTCCTCATCAAGGTCGGCGAAGTCCC 6340 29 100.0 32 ............................. GGCACCGGCGCAAGCGCGATCCGCCGGGAGCT 6401 29 96.6 32 ............................T GCCGTCGGCCCAGGCGTCCCCGGTCGGGGAGG 6462 29 100.0 32 ............................. CGGCTCACCGCCGGCGAGTTCACCACCTACGC 6523 29 100.0 32 ............................. GCCCAGTGGACGCAGCGCGCGGTGTACTACCT 6584 29 96.6 33 .............C............... TCGCCGAACGGGGGACCCCCGTCGCCCCGTTCG 6646 29 96.6 32 ............................T CCCAAGGCGTTCAATCCGCTTGGCGCCGATCA 6707 29 96.6 32 ............................G ATCGGACGCTACACGCTGACCACCACGGGACG 6768 29 100.0 32 ............................. AGCTGCTGCATCGCGGCGTGGACCTCTTGGCG 6829 29 96.6 32 ............................G TCGGTGGGGGTTGCCGCGTTGCGGACGATGGT 6890 29 96.6 32 ............................T TTGAGCACGGCTCTCCTAAAGCCGGTGTCGCA 6951 28 75.9 33 ............T...-C.A.CC.....A GCAACGGACTCATGATCCGTCGGCAGTGGGTTC CG [6959] 7014 28 86.2 0 .....G.......G...-.........T. | ========== ====== ====== ====== ============================= ======================================== ================== 38 29 98.2 32 CTGCTCCCCACGCACGTGGGGGTGTTCCC # Left flank : TGTGCCTCATGAAGTTCGCGGATGCACCGGACCTGGCGTACGTGGAGGGGCTGCACTCCGGAACAGTCATGGACGCCGACTGCCCGGAAGAGGTCCAACTCTGCCGCGACGCGTACGATTCAGCGAGGACGGCAGCCCTCCACCCGGATGCGTCCCTGCGGCTTCTCGAAACCGTCATGGAGGAGTACAGATCCCATGTCCGCACCCTTCAGTCTCAGCAGCACTCGTTGGCGGAAGTCGAGCTACAGCGGCGGGGATAACGGCTCCTGCGTCGAGGTGGCGGACGGCATCCCCACCCACCTCCCGGTCCGGGACTCCAAGAACCCGACCGGCGCGGCACTCACCATCCCCAACGCCACCTGGACGGCCTTCATAGCCGGCCTGACCACCAGCACTCTGGGCCCCGGAGCGCGACGGGACACACGGTGACCGAAATGCCGGAGTTTGGCAAAGTAAGTAAAATCCACCTCCCCGCCACCTAAACCCGCAGGTCGCGCACT # Right flank : CCTCGACCTCCGGCGCCGGGCTGCTGCCTTGGTGCTCAGGACGCTCGGGGAGGCCGAGCGCGCAGACTCCGGCGCCGCTTGCCCGCCGGCCGGGCGAAAGCTATCCAGCGACCTGCTGTTCACGAGGCAGCTGCTCCGGGGTTCGGGAAACCCTGTCCCTCATCGCTGCGGCAGGATCTCAGCGGATGTGTGGCAGGGAGGCCCACGTCGTCCGCACCGATGCGGTGTCCTGCTTCGTCGACCGCCATCGCCCGCCGCAGGCAAAAGAAATGCCGACCGGGGCGGGTCCAGGACCCACCCTCCCGCAGGGCGAGAGGGGGAGCGCCCCCGGTCGGCGACCGCCCTTTCAACGAAAGGACGATCAGGTTACACCCGTCAACACCGCCGTGCTCGAGCGCAGTTGAATTCAGGCAGCACACCCCTTGCACCGGCGTTCATCCGGACACGGGGCCGCAGGGCGGCGGTGGGCGCGGCCGGGGTCAGTTGCCGAAGCGGCGGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGTGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17668-22091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000060.1 Streptomyces lonarensis strain NCL716 NODE_60_length_25566_cov_99.853056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17668 29 100.0 32 ............................. GCCGCCGCCGCCCGCCGGGCAGCAGAGGCGGC 17729 29 100.0 32 ............................. CGCTCCGGCGGATCGTCCGGCGGGGGCTCGGG 17790 29 96.6 32 ............................G CACCGGTGGACGTGGGACGAGCGCGGCGCCAT 17851 29 96.6 32 ............................T GTCTCCGAGCGCCGGGGCGGACTCCGGCTTAA 17912 29 100.0 32 ............................. CACGGCAGTCCTGGAGGACATGGCCGGAGCCA 17973 29 96.6 33 ............................A CTGCATATCGGTGCCAGTGAGACTGTCGAGCCG 18035 29 100.0 32 ............................. TTAGGAAGCTACTGTTGAGCCATCAGGTCAGG 18096 29 100.0 32 ............................. TCGGCAAGGTCGCTGTCGTAGGCGCGCTGGGT 18157 29 100.0 32 ............................. CCGGACACCGCCCCCCAGCGCCGCGCGGTCGC 18218 29 100.0 32 ............................. GCGGGGAGACTCGGGTCTCCGGTGCGCCACAC 18279 29 96.6 32 .............G............... TGTCAGCGCGCGGATGCTGCCCACGATCCCGT 18340 29 96.6 32 ............................G TCCGGCATCGGCGGTGGCCGCAGTCCGGCCTC 18401 29 96.6 32 ............................A ACGGCGATGATCTCCGCCATGGCCACGCCCAT 18462 29 100.0 32 ............................. GATGGTCGCGCGGGAGTAGCGGCGGACGTACC 18523 29 100.0 32 ............................. GCCGAAATCGCGGACCTCGCGAAGCTGCTGGA 18584 29 100.0 32 ............................. GGGCACTGTGGGTCGCCGACAAGGTGCGGACC 18645 29 100.0 32 ............................. CGGCAGGGCCAGGCCGCCTACGGCACCGGCTC 18706 29 100.0 32 ............................. GCCGCCGGCTGGTACACGGCCAGCAGGAGGCG 18767 29 100.0 32 ............................. CGCCTCGTGGACGACGCGCGGCTGGACGTCCA 18828 29 100.0 32 ............................. GGGCGCTCCAGCCACCCCACGGAGAAGCCCAT 18889 29 100.0 32 ............................. GAGAAGGCGCACGGCATCGTGACCGGCCTCGC 18950 29 100.0 32 ............................. AGCTGGTCCCGCAGAACACGGTCGACACCTAC 19011 29 96.6 32 ............................T GCCGCTCTGGCCGATGTTCGCGCGGCGCCCCG 19072 29 100.0 32 ............................. TTCGAGGGCATCGCCAACGTCTCCGGCATCCA 19133 29 100.0 32 ............................. GCCGGGCGCCCCTGCGGAGCCTTCTGGCGGAG 19194 29 100.0 32 ............................. TTTCGGCGTCGGCCCGCTGTCGTTCGTCGCGG 19255 29 100.0 32 ............................. TGCCTTGCCGCTTGTCCGCTGCCTACACGGTG 19316 29 100.0 32 ............................. ACGGGGCGCGGGACGGAAGCTTTCGACCAGGT 19377 29 100.0 32 ............................. GGACCTCACCGTCGCACCCCAGCGGGTCGACG 19438 29 100.0 32 ............................. CTCGTTGTGAGTCTTACGGGGGAGGCTGATTC 19499 29 100.0 32 ............................. GCGGGGGATCGTCACTGGACGCCGGGTTCCGG 19560 29 100.0 32 ............................. GAGGCGATGGTCATGGCGACGATGGCCACGCC 19621 29 100.0 32 ............................. GCCCACGCAGTCCTCGGGCTCCTCAGCCCGGA 19682 29 100.0 32 ............................. CTGCCGAAGATCGCCGACCTGGTCGGCCCGCG 19743 29 100.0 32 ............................. TGGCCGACGACCGGGACGTTACCTTCATCGTC 19804 29 100.0 32 ............................. TCGCTGGCCAGCTTGACCACCGGGAGAAGGGC 19865 29 96.6 33 ............................T AGCGCGCTTTCAGCCGCTCGTCCTCGGTGTTCA 19927 29 100.0 32 ............................. ACCCAGCGCGGGAAGCGGCAGCGGCCCATGCA 19988 29 100.0 32 ............................. GCCTTCGCCCCCTCCACCTCGCCGGGCGTGGC 20049 29 100.0 32 ............................. CACCGTCGGCGGTCGGCTCGTTTACCGGCGCT 20110 29 100.0 32 ............................. GATCGCCGGTATGCCCCGGTATGCCTGCCGGC 20171 29 100.0 32 ............................. TCGCGGCCCGGTTGAAGGGGAAGTCCAGGTCG 20232 29 96.6 32 ....................A........ AGTGCTACGAACCAGGCTACGAGCCTTGAGGG 20293 29 100.0 32 ............................. TGGGTGACCAGCAAGTTCGAGGACATCGGCAA 20354 29 100.0 32 ............................. CCCAGGATGGCCAGGAGCAGGATCGCGCCGAT 20415 29 96.6 32 ..................A.......... ATCGCACCCCGCAGCGCCTGCGCTGCCCGTCA 20476 29 100.0 32 ............................. ACGAGATGGACTGGCGCACCCGCCGCATCCAG 20537 29 96.6 32 ............T................ TCGCCCAGCGCGAGGCGCAGCTCACCGCCCAG 20598 29 100.0 32 ............................. CGGCGCGACGGGACGCTGTCCCGCTCCCGCCC 20659 29 100.0 32 ............................. TGGCAATCCAGCGAGAAGCGGCCCGGCGTCAC 20720 29 100.0 32 ............................. GACGCCGTCGCCGCGCTCGAAGTCGCGGAGGA 20781 29 96.6 32 ............................T GAAGTGCAGGCCGGTGAGGGCGAGACGGGCAT 20842 29 96.6 32 ............................T TAGGCGCAGGAGTTGCTCCCGCTGGTTGTCGT 20903 29 100.0 32 ............................. GAGGGGCTGTTCGGCAGCACCGAGCGCACCGC 20964 29 100.0 32 ............................. GCGGCGAGATTGCATGCTTCACGCACCCCCCG 21025 29 100.0 32 ............................. ATCAGCAGGCCGACCAACACGTTGCGGACGCC 21086 29 100.0 32 ............................. CCACGACGCCCGCTTCACCGACGACGCCGGCA 21147 29 96.6 32 ............................T TTGAAGGGCCGACCGTCCTTGGGCTTGGCGCG 21208 29 100.0 32 ............................. GTCACGGTCACCGACTTGAAGCGCTCGTCGCT 21269 29 100.0 32 ............................. CCGCCCCGGGGCGTCCCTGTCCGCGCTCATCG 21330 29 100.0 33 ............................. AGCATCGGGAAGTCGGTGGACGAGTTCGACTCG 21392 29 100.0 32 ............................. CGCCACAGCACCTCGCCGCCGGCAAACCGCAG 21453 29 100.0 32 ............................. TCGCGGTGCATGTCCGGACTGTCGTGGGCGGT 21514 29 100.0 32 ............................. GCGATGGGGGACCACGGCGCGACCACGGTCGA 21575 29 100.0 32 ............................. ACCGCCGATTCGCATTCCGCGGGTCACCGACT 21636 29 100.0 32 ............................. GCTCAGTCATCTCGTCTCGGAGTACAACAAGA 21697 29 100.0 32 ............................. GTCCGCGAGGTCGCGGACGGCGAGGACCCGAA 21758 29 100.0 32 ............................. GATATTTCGGCACAGCGGGACGACCGGGGGAA 21819 29 96.6 32 .....T....................... GGCATACCTCTCGCCGGGCACGTGGCCGGCCG 21880 29 96.6 32 ........................C.... CTGCGCCCGGTCGGACACAACGACGAACTCAA 21941 29 100.0 32 ............................. ATGAACTCCCGGTTCCCGATGAACAGGGCGGG 22002 29 96.6 32 ..................A.......... GATGACCAGGTCGTTGCTCTGCTTGAGGCGCG 22063 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 73 29 99.2 32 CTGCTCCCCGCGCCTGCGGGGGTGTTCCC # Left flank : AGGGGCAACCACGCGCCGTTCAGCGTGCCGGCCTGATCCGTCTTACCCCAGGCGGCACGCGCCGCCACCGACAGCGTCCCCAACGGCGTCCAGCGCCCCTCGCCGCCGCCGAACGCATCCCCGAATTCATCCCCGAGAGCAGACATGACTCCCCCGAAAGAAGTGGTGCTGATGTGGGGGTACTGCACAGTGTGCGGCACGAGACGGAGCCGCCGGAGCAATTCTCGGCACATCAGGGAAAGTCGAGCGCCACTGCACCGCCGCGTGATATCAGCGCTCGCGGCGTACACCCGGCGCAGGGGGCGGCTGAGGTGAGCCCGAGCCTGCACCTGACGCGTCTTCCACTACCGTTGCGGCATCACCCGAACGGACGACAGCGACGGACGACAGCAGATGACGGTGGACGGGAATCGAAAGAAGGGCTTAGGTTCGCTATGCCGGAGTTTGGCAAAGTAAGTAAAATCCGTTCCCCCGGCACATGAACCACCAGGTCGCGCACT # Right flank : CAAGGCCGGGACGTTCCCGGCGGCCAACACGTTCCGCTCGCCGCGCCTGGGGCCGACACAGGCGGAGGCGGGCCGAGCGCGCCCGGGGCCCCTCGACGCGCGCGGCGCCCGCGCAACGCGCGTCGTCAGATGCGGAGGGCGCGGGCGGTGTTGGCGGCGATGTGGGTGGCGAGGGTGGTCTCGTCGGTGGCGCGGACCTCGGCCATGACGCGGAGCGTGTAGGGGATGAGGTACGGCGCGTTGGGGCGCCCGCGGTAGGGGGCCGGGGTGAGGAACGGGGCGTCGGTCTCGACCAGCAGCAGGTGGTCGGGGACGACGGCGAGGGCGTCGCGGAGCGGCTGCGCGCTCTTGAAGGTGACGTTTCCCGCGAAGGACATGTAGTGGCCGGCCTCGGCGCAGCGGCTGGCGAAGTCGGCGTCGCCGGAGAAGCAGTGGAAGACGGTGCGTTCGGGGGCGCCCTCGTCCTCCAGGACCCGCAGGACGTCCTCGTGGGCGTCGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15165-14674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000068.1 Streptomyces lonarensis strain NCL716 NODE_68_length_23487_cov_96.856629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 15164 31 100.0 37 ............................... AATCCGTCCGGGGAAATGGCGCCCGTCAGCACATCCG 15096 31 96.8 36 A.............................. GCGGGCATGATCCACCGGGTCTCGGTGCGGTAGTGG 15029 31 100.0 35 ............................... CGGACATCGTCAAGGGCCTGCGCCTCTACGGCAGT 14963 31 96.8 35 C.............................. TCCACGAGGACGAGCAGCTGCCGGGGCAGGCGGCG 14897 31 100.0 37 ............................... CCGTACATGGCGAGGGTGCCGGCCCGGCCGGTCTCCA 14829 31 100.0 34 ............................... CAGTTCGGGCAGGAGTCCTGGCCGAGCCGGTAGC 14764 31 90.3 27 C...............C............C. GCCGGGCTCGACCTCGTACCGGCCGTG Deletion [14707] 14706 31 74.2 0 .....G...T..A...C......CCG...C. | GC [14677] ========== ====== ====== ====== =============================== ===================================== ================== 8 31 94.8 35 GGTCCTCATCGCCCCTGAGAGGGGTAGCAAC # Left flank : ACAGCGTGCCTGAATAGCATGTCATCTTGCTGACTCGGCAAGAAGGTGGTGGCGACTGCTGCACTAGGCGCAAGCAGGCCGGGCCAGACGCATCTCCGGGCCACACCACTGGACCGGCGGTAGGTCTGCCCAGCCAGGGCGGGGACTGCGGCTCAGTGAACGCGCAGTCCAGAGCAGGCCGGCCACGGCATGCTGCTTGGGACGCCCGCTGTCTCCCGCCCAACCACGACCGGTACCGGCGGCGCATCGGGAGCCCTGCCCCGAGCGTCAGCTGACCGGCTCTTGGGCCAAGTTCACCAAGGTCGCTTGGTACACCCGAACACCGCCATGGGACCTGCTCCTCGTGCCATGCTGAGGGGGTACGGAGTCCATCTGTGCATGGTCCGGACGCCCCGAATTTCAGCGACACGCCGGGGTTTTCAGCACTACCGGAGGTTCGCTGAAAAACACCCCCCGCGTCACCCCCGCGGTTCCGCCTCCGACCTGGACCTTCACAGTGG # Right flank : GCACCACTCGGGCGATCACTGCCCGCCGTGACACGAAGGGCAGGGGTTCGCCGCGTGGGTGTGGGCTGCTGCCATGAGGTCGGCGACGACGGCCGCCTTGGCGGCGGAGTAGGCGAGGAGCGACGGTGCGCGCCGGGCTGCTTCCCGCTTGGCAGCGGCGTAGCGGTCGGCGGCTGCGGGGTGGGCGGTCAGGTAGTCGCGGAAGAGGATGTTGTCCCGCCACAACGAGCCGTCTCGCTCGACCACATGCACGTTGATCGGCGGCTCATCGCGTCTGCGCAGGTACTCCCGTCCGGGAACACCGGCAGTGCCGAGGTGGTCGTACCCCGCGCGGCGAAGCGCGGCCACGACGGCGGGTACCTCGCTCCCCCGGCAGCCGACCTGGAGGTCGATGATCGACTTCGCGTCCAGCCCCGGTACAGCCGTCGAGCCGATGTGTGCGACGACCGCTGCGGCCGACTCCGGCTCGACCAGCCGCCCGACGTCGCGCGTCAGCTCCC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTGAGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 16859-16564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000068.1 Streptomyces lonarensis strain NCL716 NODE_68_length_23487_cov_96.856629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16858 30 100.0 37 .............................. CCGGGGTCTCGTGCGGCGCGTAGTGCTGGTGGATCTG 16791 30 100.0 36 .............................. AGCGCACCGGCCTCAACGTCCAGAGCCTCATCGAGG 16725 30 100.0 36 .............................. AGGACTACGAAGCGCCGATGGGTGAGGACGTCCGGT 16659 30 96.7 36 ...............G.............. TGCCAGATCGTGAGGCAGACGATGCCCATGCCGCGC 16593 30 90.0 0 ...............CC...........C. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTCCTCATCGCCCCTTTGAGGGGTAGCAAC # Left flank : ACGCACCACCGGCGGTGGCGATTCCCGCCGTCACACCCAGGGCAGCGACGGCGGCAGCGACGGTGACGGCTGTGCGGAAGCGGGGACGGCGAGGAAGGGAGGAAGCCATGGCGTCTACCTCTTTCAGGTTCGGAGTCGAAGTGGAGTCGCAGTCGTACCGCCGAGCGCTGAGCTCGACGGGACCGACCCTGCGCCCGCCCCCGTCCCAGCCGCCACCGACCACACCCAACCCGGGACGCTGGGACACCGGAACCGCCTCTGAACAGCAGAGACACCACCCCGCTGGGACACCGATCCGGGACGCCGCAGGCCGCCCGGCGCCGCCGAATCCCACCGAAAGCCCCACCCGTACCCGCCCACCCATGCCATCCTGAGCGAGCCCGCACCAGCCCCGGATTTCAGCGACACGCCGAGGTTCCGAGCACAACCGGAGGTCCGCTGAAAACCACCCCACCCACAACCCCGGCGGCACCTTCCCTGACCTGGACCTTCACCATGGG # Right flank : AGCCGTCGCCGCACGGCTTACCGCTTGCGGGCTGCCCAGACGGTGCGGGTGGTGCGGACGGCGAGGTCGGTGCGGCGGAGGATGCTGCGGGGGCCGGCGGGGTCGAGTAGGGCGTCGAGCGCGATGACGTCGGCGGGGTCCAGGCCCGGCGCTGCCGTGTTGCGGAGCCGCTGGAGGCTGCCGAGGGCGTAGCGGCCGATGGCCTCGCTGCGGTCGCCCTCAATGTTCACCGCGATGGTGCGGGTGTCCTCGACGGTGAACCCGGCGGCCGAAAGCATCGGACCCCAGTCGGTGCCTCGATGGGGGACGTGTTCGGCGTGGAAGCTGTCGGTGGCCCGGTGGCAGCGTTCCTCCAGCCCAGGGCGGTCGGCGGGCACGTCGGCCGGGAGGAAGCGCGGGAAGCCGTCCAGCTCGACGACGGCGAAGAGGCCGCCGGGCGGCAGCAGCTCGTGCACCTTGGCGAGCGCGTGCGCGGGGTCGGCCATGTGGTGCATCGAGGC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTTTGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 2082-2444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000015.1 Streptomyces lonarensis strain NCL716 NODE_15_length_44033_cov_77.323169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2082 30 100.0 36 .............................. ACGCGTTTGCCGCCAGCGCCGGGTCGGGGTGGGTGA 2148 30 100.0 37 .............................. ACTGCCCCGCGTCCAGCGCGGCCTGCCGGAGCTGGCC 2215 30 100.0 37 .............................. GCGACCTCCGGGCGGCGGGCCTCCACCTCCTTCAGCT 2282 30 100.0 36 .............................. GGGCCAGATCGGTCATCGGTTCCTCCTCGGTGGGGG 2348 30 100.0 37 .............................. GTGCCGCCGTCCGAGAGCCGGACGGCAACCCACCGCA 2415 30 93.3 0 .......................C.....T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 37 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CAGCCCCGCGACGGCGGCGTCGGCAGCGGCGTCATGATCACCGGCTGCAACGGCAGCGGCGCCCAGCAGTGGACCTTCCACAGCGACGGCACGCTCCGCAACGGCGGACGCTGCCTCTCCCTCTCCGGCGGCTCCACGGCCGACGGGACATCCGTCGTCATGGACACCTGCCAGGGCACCTCCGACCGGTTGCAGTGGCGCTACTCGCCCTCCTGGGACGTCGTCAACATCGCCTCCAACCAGTGCCTCGACGTCGCCAACGGCGACGCCTCCCACGGCACCCACCTCCAGATCGCCTGGTGCTCCGGCAACCCCGCCCAGAAATGGGACCGCAGCTGAGACCGACCTGCCGAACACCCCCGCCGGACGACCGCCCGGCGGGTAGCCTGAACCCGGATTTCAGCGACACGCCGAGGCTTCCGACACAACCGGAGGTCCGCTGAAAACCCCGCCCGCCCCACCCACCCCCGGCGCGCCCTGACCTGGCCCTTCACACTGGG # Right flank : TTGGCTAGCAGGCCGTGGAAGGAAGCGGCGGAATGGTCTCGTCGCCTCTTCGTGGGAAACCCTCCCACTCGGGCCTTGGGTGGTGTCCACGCTTGCCGCCCGCGCTACGGCTACAGGTGGAGCGAAGGTCACCGCAGTTCGGCTTCGCCCGTACGATCGGCCCATGCCAGCCGATCCCGTGACGCGGTCCATGTGTCGTGTTCAGCCGATGTCGGAGCTTCCCCGGCGGATCTGGTCGGAGGAGGACTGGGGTCGCATTCAGCGCGGCTACCAGTCGCGGGACATGGACGAGAGGTGGGACGTCTTCACGGAGGGCGAGGTCGTCTTCCTTCACCGGAGTTGGACCGGGTTCGGTGTGTACGCGGCGACTTTCGCGCCGGTGGAGAACGGCGGACGGCGAATTGTCAGCGCGCTGGTGGAGCGTGATGGTGATCGCTACAAAGGGACGGACGACGGCTACGACTGCCTCATGTTGGAGCTTGTCATCACCGCCATCGTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3215-5620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJD010000179.1 Streptomyces lonarensis strain NCL716 NODE_179_length_10743_cov_85.572491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3215 28 100.0 33 ............................ CCCGAGGACGCTCCGGTCGTGGGAGTCCGGTCG 3276 28 100.0 33 ............................ CGGCCAGCCCGTCGAGCCCTTCGACGTCGGGCA 3337 28 100.0 33 ............................ CCGCCGCCGCGCTCAGGATCGTTCCTGACGAAG 3398 28 100.0 33 ............................ CGGACGACGACCCCGACATCACGACGGCGGCCG 3459 28 100.0 33 ............................ CTCGGGGTGCGGGTCTGCGGTGCCGGCGCTGTG 3520 28 100.0 33 ............................ CGGACGGCCGCCGGCGGTGATGGTGAGCTTGTC 3581 28 100.0 33 ............................ CGAGAACTACACCGTCGCCGGCGTCACTGTCGG 3642 28 100.0 33 ............................ TGCCTTCTCGAAGCGGGCCAGCCAGGCTGCGGG 3703 28 100.0 33 ............................ CCGTTCGATGGCCTCCATCAGCTGCGTCACCTC 3764 28 100.0 33 ............................ CATCCCGTACCTGGCCAAGGGCGGCACGATCCG 3825 28 100.0 33 ............................ GATCATCAAGACCATGAGCGCCAGGAGCGCGGT 3886 28 100.0 33 ............................ CCGGGCAGCCCTGGTCGTGCCGAGGCGCGAGAA 3947 28 100.0 33 ............................ CGACACCCTCCCTGCCGCTGCCGCGGGACTGCT 4008 28 96.4 33 T........................... CGCCTACTGGTCGGGGGAGGGGACTGGTACACC 4069 28 100.0 33 ............................ CCGTGAGGTCGGGCTGTGGTGTGACCTGTGGTC 4130 28 100.0 33 ............................ CATGGACTTCGGTCTGAAGCCGGGCGCGGAGAC 4191 28 100.0 33 ............................ CATCCGGTTCACGGCCGCCCACATCCGGGAGAT 4252 28 100.0 33 ............................ CGTCTGGCGGCGGTGAGGTCGCGCGAGTCAACT 4313 28 100.0 33 ............................ CCGCGACCACATCGCCTCGGGCGAGGTGTGGCG 4374 28 100.0 33 ............................ CAACCTATTCCCGCGCGTGCTCCGGTCGTACGG 4435 28 100.0 33 ............................ CGCCGGTCCGGATGTGCTCGCGGACCATATCCG 4496 28 100.0 33 ............................ CCGCGACCACATCGCCTCGGGCGAGGTGTGGCG 4557 28 100.0 33 ............................ CAACCTCTTCCCGCGCGTGCTCCGGTCGTACGG 4618 28 100.0 33 ............................ CGCCGGTCCGGATGTGCTCGCGGACCATGTCCG 4679 28 100.0 33 ............................ CGAAGTCCGCCTTCAGCCGCCTCGGCGACGGGG 4740 28 100.0 34 ............................ CGAGTGCGTCGCCCTCGCCCTCGACCCGGGCGCG 4802 28 100.0 33 ............................ CGCGCTGCGGAAGCGCATCACCTCAGGCCAGGA 4863 28 100.0 33 ............................ CGGGCCCGCCGTCGAGCGGGCGCTGCACGACGG 4924 28 100.0 33 ............................ CCGCTGACCCTGTGGGCCTCGTCGACCACCAGG 4985 28 100.0 33 ............................ CCGTCACCGGAGACACCGGCGGCGAGCAGCGCC 5046 28 100.0 33 ............................ CGGCCTGTACGGCGCTCATGGCGAATTCGAAAT 5107 28 100.0 33 ............................ CAACCCCGACGGTTTCAGGAACGGCCTGAGGGT 5168 28 100.0 33 ............................ CGGTCGGGACGCTGCTCGCCGCTCCGGGTCACG 5229 28 100.0 33 ............................ GAGTCCATGTACCTCAACGACCAGGGGCATCTG 5290 28 100.0 33 ............................ CACGTCGCGGAGAATGGCGTCCCAGAGCCAAGA 5351 28 100.0 33 ............................ CCGCCGAAGATCACCGACCCGGAGCCGCCCGGG 5412 28 100.0 33 ............................ CGCCTCGCCCTGGTCGTCGACCTCGGACTCGCG 5473 28 100.0 33 ............................ CCGATGCGCAGCGCCCCTCGTACCCCACCGATG 5534 28 100.0 33 ............................ CAACCCACGGCAGGTGCCGAGCAAGCTGTGCGG 5595 26 89.3 0 .....................C..--.. | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.6 33 CTCCTCCCCGCACACGCGGGGGTGTTCC # Left flank : CCGCCCCACCACCGCCCCGCTCCACCTCCTGCGGCGCCGCCTCCACCACGCGGCGGCCGGCGGCCGCGCCCTGCTCACCCAACCTCCCGGCAACGACCCCGGCACGCTGCGGGACCACGCCCTGCCGACCGCCGCCGCGCTCCTGGAGACGCTGCACCGGACCGCCGCCGACCGCACCCGCGACACCTTCGGACGGCTGCGCGCCACCGACCCCGAACTGTTCGCCCGCGCATGGCTCGCCGTCGCCCTCTACACCGACGAACTCGACCGGGCACTGTGCGCAGAAGCCTGGACCGACGACCCCAGCTGACCACTCGGCCGCACATCGACCGCCGCAGCCGACGACCCGAGCCGGACCACCCAAGCCGGCCCGAACACCCCACCGGCGCCGTATCGTTGCTCCGAGGCCGACCGCGCGACCTGGAATGGGTGAAATGCCGGAGTTTAGTAAAGTAAGTAAAATCCAGTTACTCACCAGTTAACGCCCCAGGTCACGCACG # Right flank : CCATGGACGAGGCGTAGGGCCCGGTGGCTGCTTCAATCTCCGCCTGTGCGGGGAAGGCTCAGACGTATGTAAGACGAAGTACCGTCACGGTGACAATGCGGTTCGAGACGAGGTACATGATCTGACCCGCGCTGCCGAAATCCCGGTACCACACCTCGTTGGAGCCCTTCTTGCCCTTCCTGAAGGGGTTGGCCTGGATCTCCTTGAGTGCTTCTTCCAGCTCTCTGCGTGGTCCGGCCGGAAGGGAGTCTCGCTGGCGCGCCGCTTCTGTCACGAACCGGATCTCGTATGTGGCCATGCCTAGGACAGTTCCCCGCCGTCGGTGAAGACAGACTCGTCGCCGGCCTCAATGCGTCGAATCATGGCGAGGTCGATCTGCTGGTGTTCCGGGTTGGCGTTCCGGCACGCGGGGGTCCACCACTCGGACACCACCTCGACCAGGCGCCGGTGGTCGTAGGACTGCGCCGCGAAGTCGGCAGCTCCAGCGAAGTCCAGCTCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //