Array 1 26446-25867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXY010000024.1 Providencia huaxiensis strain Pvs2 NODE_24_length_47509_cov_13.685281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 26445 28 100.0 32 ............................ AGCATCAATTAAATCTTGCATGGCTTTATTGT 26385 28 100.0 55 ............................ GTGGATGAAGGTGACGACTGAAAGTGGATGAAGGTGACGACTGGACAGATCCTAA 26302 28 100.0 32 ............................ CCACATTTCAACTTTGACATTAGGCACACCAT 26242 28 100.0 33 ............................ TGCTCATAATCAATTTCAGGAATATTTTTACTG 26181 28 100.0 32 ............................ ATAATCCAAGCTGCAGCATCTTCTTGCGGAAT 26121 28 89.3 199 .............T....A........T TTATAAGAAAATACCCATTATTTATTATTGTCTACGCTATTTTAAGATAAACTTTATTTACTTTTAATTAGTCATCCCATATTAACTTTTAATCTTTACGTTAAAAACAATTCATCTTAGATTTCTCTCCGTACCGTATTAATTAAGTAGATAGATAACTGTCAATTGACAGCTTAGAAACGAAACAAGTAATGGGTAT 25894 28 75.0 0 .A.T........G..........TTT.T | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 7 28 94.9 64 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAAACCGTACCTGAACAGCATGTCCAAGTAAGCTATATTCGAAAGCATGTAAAAGGTCAGAGTCGAATTGAAGCCGATATGCAGCAAAAAGCGCGATTATGGTCTGAAAAATCAGGACAACCATTAGAACAGTGCTTAAAGACGTTGTCTGCGAGTAAGCCAAAGGCGGCTAATCGCTTGCCATTTATTTGGGTTGAAAGCTTACATGCCAGAGATAAGCAAGCTGAAAGCCGGTCTTTTCCTTTGTTTATTAAAAGGATAGACGCTACACAAAAGCAAGTTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAATGACTCAGTTTGTTTAGCAACGGTTCCACATTTTTGACCTTTGTCTTTTGCTCTTTTAAAATTGGTTAATAAATCAGTAAGTTATAATTATCAGTAAATAAAAGGGTATTTTTCGATAAATACCCTTAACTGATTGTTATTACTTGTTTTTTGTTTTAAAGTGCATT # Right flank : GATAATGCCTGAAACAAGTATTGGGTTTTATATGTCGATTTAATAAAAGGAAAAGTCAATGAGTTTTGAATTCGAAATAAGTTTTTATATATTTACTTTAAGAATCAGAATGACCAAATGGTTTTACTAATTAATTGATTAAGTATCGATACTCAAACAAACAAATTAAACATCAACGATAACTGCTCGAAAGCTTGGTGGATAAGCCGCTCGGTGTAGCGGGGGAGGATAGAGATAATCACTCCTAACATACTGATACCGATAGTTAAGGTGAGGGGGAACCCCACGACAAACACCGACAACTGCGGGGTCATGCGGTTTAGGATACCCAGAGCAAGGTTTAGAATTAAAAATAAGGTGATAAACGGCAAAGCTAACATTAACCCATTAATAAATATAGTGTTAGCAAATTGAGCAAATACCCAAAAACCATCGCGATTTAATGGTGCGGTTTGAATTGGGAGCAGTTCAAATGAATTGACCACGATATAAATAAGCCA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35631-35065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXY010000024.1 Providencia huaxiensis strain Pvs2 NODE_24_length_47509_cov_13.685281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35630 28 100.0 33 ............................ TCTAATATAGAGTATGTCACCATTTTCTATTAT 35569 28 100.0 31 ............................ AAAAAACACTGTTATATTAATGTTGATGAAG 35510 28 100.0 32 ............................ TTTACCTGTTTGTGTAGCTCCGAGTATTTTTA 35450 28 100.0 32 ............................ ACTCTTCGCTTCCTTGCTCTACTTTGGTTAAA 35390 28 100.0 32 ............................ TCAGCGACGAGTTTAATGATGTTGAAGAGATA 35330 28 100.0 32 ............................ TGAAGAAATAATGAAGAATGGGAAACCGCACG 35270 28 100.0 32 ............................ CCTGAAAAAAGTGAGTTATTAACCGACTGGTT 35210 28 100.0 32 ............................ GTTTTTCTCATACAGCTTGTTATTGAATGTGG 35150 28 96.4 30 ...........T................ CTAAACCCGCCTTGTTTTGACTCCGCCACA 35092 28 71.4 0 ...T...A.....T.AA.C..A..A... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAATATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCAATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTTAAAGACTTAAATAGCATGTCACTTTTCGGTAGCCGTTAATTATTTAATATTATTTTTACTCACCGCGCTTTGGAGTGATCCAAGCGCGGTTTTTTTGTTTGGTTTTTTTAGTCACTACTTCAAAGTTTGAGTTCACTATTTGTGTTTTTCATATTGCATAAATTTGCGTTTGTTTTACCCTAATTTGACCTTTGATTTTTGCTCTTTAAAAATTCATTAACTAAACAATAAGTTACAACCAGTACTGAAAATAAAGCTATTTTTCATTTTTTAAAGTTAGCACGTTGTTTTTATTTGTTTTAATCTACAAAAGTTATA # Right flank : AGTTATCAAAGAGGTATTTTTTACTCACCATTTTGTGAAACTCTTCGCAAATTGGACTTTAGTCATGGGTTAAGGCTTGTTTCGTAAGTTAAAGCTTATTCTAATAGGATTAATTGATTCAAAAATCTTATTATTTAAGGACGAAATTTAGCGTTTATGGATGATTTCTCGCCGAGTGACTTAAAAACTATTTTGCATTCAAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTGATGCAAAAAGACGGCCGAGTGCTCTATTTTACCGAAGCCAAAAACGAAAACCTCTATTTCAATATCCCGATTGCGAATACTACAGTTTTATTACTGGGAACAGGAACCTCCGTCACTCAGGCGGCGATGCGAATGCTATCCCAAGCAGGGGTACTCGTTGGCTTCTGTGGTGGTGGGGGAGCGCCACTGTATATGTCCACCGAAGTTGAATGGCTAACGCCACAAGGGGAGTATCGGCCAACGGAATATCTACAAGGCTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //