Array 1 218371-216473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEZ010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-37 NODE_4_length_324657_cov_6.982898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218370 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218309 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218248 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218187 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218125 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218064 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218003 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 217942 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217881 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217820 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217759 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217698 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217637 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217576 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217515 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217454 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217393 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217332 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217271 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217210 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217152 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217091 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217030 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 216969 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216908 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216847 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216786 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216725 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216686] 216685 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216624 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216563 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216502 29 93.1 0 A...........T................ | A [216475] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236269-234653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEZ010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-37 NODE_4_length_324657_cov_6.982898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236268 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236206 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236145 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236084 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236023 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 235962 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 235901 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235840 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235779 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235718 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235657 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235596 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235535 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235474 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235413 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235352 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235291 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235230 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235168 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235107 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235046 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 234985 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 234924 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234863 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234802 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234741 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234680 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //