Array 1 15505-21834 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIQ01000037.1 Vibrio cholerae strain N2825 NODE_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15505 28 100.0 32 ............................ TAGGCTTGGACAACTTGAAAAAAGTTTGGTCG 15565 28 100.0 32 ............................ TTACTCGCTAGATCAGGCGGTAAATGGATTCG 15625 28 100.0 32 ............................ TTTCAGATTCAGCGCCCGTTGAAGTAGATTGC 15685 28 100.0 32 ............................ GTTGGCTGGAAAAGAACGCAGGACAAAAAAGG 15745 28 100.0 32 ............................ GGGGCCAGTGAGCACTTCGGCAGGAATGTTTG 15805 28 100.0 32 ............................ TTGGATTATTTCCTCGGCATTCTCAGTGTCAG 15865 28 100.0 32 ............................ TGTTAATGTCGCGCCATTTCCGGTTCTTTCAT 15925 28 100.0 32 ............................ GCAGCCGAAGTCGAAACTGGACACAAGCGAGC 15985 28 100.0 32 ............................ TGAACCAACCGAGCCAGAGCCAAGCAACTGCC 16045 28 100.0 32 ............................ ACATCACTGGTGACTTGCCCCTTGAGAATGGT 16105 28 100.0 32 ............................ TTTCACGTCCCCATATTCGCCGTCAATGTCCC 16165 28 100.0 32 ............................ TCTGTAACCGCGCTAATGCTTGCGCCTGAGTT 16225 28 100.0 32 ............................ TGTACGGCGCGCCACACAAACAAGCCTCGCAA 16285 28 100.0 32 ............................ ACTATAAACTCAGTTTTTAGTAGCTCTTTCAT 16345 28 100.0 32 ............................ TCTTTGATTTTTTGCTCATTGTTCAATATGTA 16405 28 100.0 32 ............................ TTCTGGCGTGCTTCCAGACTGGCGCGGAAGGG 16465 28 100.0 32 ............................ AATAACTTCACGATGCTCACAAATAACATCGT 16525 28 100.0 32 ............................ TGTGAGCTTTTGCTCAATACGTTGCTGCTGTT 16585 28 100.0 32 ............................ TTGAGCCAACCTGCCAAAAATGAACGGTTCGC 16645 28 100.0 32 ............................ GTAACGTACCAGCCATTGCCAAGATAAACAGC 16705 28 100.0 32 ............................ TCGTGGTAAACGCGCATGTCAATGAGGTAATC 16765 28 100.0 32 ............................ ACAATCTGAAAGCGCAAATGTGGTGGAGACTG 16825 28 100.0 32 ............................ ACAATCTGAAAGCGCAAATGTGGTGGAGACTG 16885 28 100.0 32 ............................ TAGAAAACAAAAAACCCGCAAAAGTGCGGGTT 16945 28 100.0 32 ............................ TGAAAAATATACATATATACATAATATATATC 17005 28 100.0 32 ............................ TTCTAGTGGGGACGGCAATCAAGCTCCTAATG 17065 28 100.0 32 ............................ ACGATGGACATAAGCGCGGTAAAAGCTATGCG 17125 28 100.0 32 ............................ GTAGATTTTCAGGTTTTCGTCATTAGCTGGGT 17185 28 100.0 32 ............................ AAACACAACCAGCAGCGCCAATAGGCGTCAAG 17245 28 100.0 32 ............................ AAAAGATTAATCAATGGCGGCAAGGAGGGGCT 17305 28 100.0 32 ............................ TGGCATGTTCACCACGTACACGGGCATTACAC 17365 28 100.0 32 ............................ TTTTCGCTGTTTGCGGTTGGCTTTTTAGTTCG 17425 28 100.0 32 ............................ TTGGTGGTGCAGCGCATCGAAACCGCCGCCAT 17485 28 100.0 32 ............................ TCAGTTTGACGGAGAAGCCAAATGAATAACGA 17545 28 100.0 32 ............................ TTTGGTTCGTTCCGCACGATAGCGAAACTTAA 17605 28 100.0 32 ............................ AAGCCAATCGATTTGGCAAACTGACCCAACAA 17665 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 17725 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 17785 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 17845 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 17905 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 17965 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 18025 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 18085 28 100.0 32 ............................ TGAAGATGCGACACGAACAGCGGAAGTCTGTT 18145 28 100.0 32 ............................ TGACGGGCACGTTTGTGGAAACGCTGATTCAC 18205 28 100.0 32 ............................ TTCATTGTCTGTTCTCCATTACTGTGGTGGGC 18265 28 100.0 33 ............................ ATTTAGCCGAGCCGTGAGATTTATCGCTTAAAT 18326 28 100.0 32 ............................ TTTGCTCGGCTAACTGCTTTAGTGGTTAGGTG 18386 28 100.0 32 ............................ AAAACCGAGATCGCCCGATTCCGCCATAGTTT 18446 28 100.0 32 ............................ TGAAAAGTGCGCTTGTATATTGGGGAGAGTCC 18506 28 100.0 32 ............................ TTTTAGCTCTTTTACTCTCCATCTTTTAGTCA 18566 28 100.0 32 ............................ TCTAAATTTAAAGCTGCACTTTGTTGCTTTGT 18626 28 100.0 32 ............................ TGAAATATCAAAGGGCGCTGAGATTTCAGCAG 18686 28 100.0 32 ............................ ATAACGATACTTGAGCCATTTCTGATAGTGGC 18746 28 100.0 32 ............................ ATGTTCACATCACCAATAAGAGGGAGTATGTA 18806 28 100.0 33 ............................ CTTAAGGGGTGCGGTCTGTGTTGCTACGATTGG 18867 28 96.4 33 ...........T................ AAGTGGACGGTGCTGGCTGGCGCGTTTGCCGTT 18928 28 96.4 32 ...........T................ TGAATAGAGCACCGAAAGCACAATAGGCGCAT 18988 28 96.4 32 ...........T................ CGCCAAGAAAAAATCATCAAACAAAGTCTCTA 19048 28 96.4 32 ...........T................ CGACTCAAAAACCAGTATCACTAGGCGAATAT 19108 28 96.4 32 ...........T................ TTACTTGTTGTTTTCAGCTTCTTCAAATAAAC 19168 28 96.4 32 ...........T................ TTGCTCAGACTCAATCTGATTAACCTTTGATT 19228 28 96.4 32 ...........T................ ATGAAGGAGTTGATGAAGATGGCCGCTTCTAA 19288 28 96.4 32 ...........T................ AGTATGCGGAAAACCAACAAACTAGATCGCAG 19348 28 96.4 32 ...........T................ TCGCGATCTGCTTCTTCTAACTTTTGTTGTGC 19408 28 96.4 32 ...........T................ TGTCAGTTCAGTGATCCATTTTTCCTATAGCG 19468 28 96.4 32 ...........T................ TGACCGTGGTCGTACTTTTTATGTAGGTGCTC 19528 28 96.4 32 ...........T................ TCGCGCAATATCGGCTTACAAGTCACGTTAAT 19588 28 96.4 32 ...........T................ GGACTTTACCGCAACCGTGGTCATCAAGGTGC 19648 28 96.4 32 ...........T................ AAGCGATGCAATGACGCGCTCAAAGCTAGTGA 19708 28 96.4 32 ...........T................ CAACAGGTGACAGGGTAGCGCCGCAGCAACTA 19768 28 96.4 32 ...........T................ TAGCAGTGCGATTTCAGGGTCAATTCCTGCTG 19828 28 96.4 32 ...........T................ ATGATGACCGGAGCGCGTATCATTTTCAGCTC 19888 28 96.4 32 ...........T................ GTACCCGTTACGGCGATGAAATGAGCGCGTCT 19948 28 100.0 32 ............................ ATTTAGGATCACTTTTAGATTCACTCCTTTAT 20008 28 100.0 32 ............................ TCTTGCCTGTAATATCCGAATCGTTCGCAGAG 20068 28 100.0 32 ............................ TCAAGGCCATGAGCAGAGCAATAGGGGTTTTC 20128 28 100.0 32 ............................ GTAACGGGTACGGAGAAAAAGACCATCTACGT 20188 28 100.0 33 ............................ CAAAAGCAACTAAGGAAGATTTATGACGGAGCA 20249 28 100.0 32 ............................ GCTAACCGCCAAGCCAAAGCTGCAGGGATTGA 20309 28 100.0 32 ............................ TTCAAAAAATCCACTAGGAGCCGTCTGATTCC 20369 28 100.0 32 ............................ TGTAATTTTATCAATGCATCGACCAATGAAAT 20429 28 100.0 32 ............................ TCTAGCGGCTCTTGGTTGTGTATCTTTTCCAA 20489 28 100.0 32 ............................ AGCATCCATGCAGGATTTGTAGTCAGAAAAAA 20549 28 100.0 32 ............................ AAGCCATTCTTGATGGGATGGCAGCTGCAGAT 20609 28 100.0 32 ............................ AGCCGTTACACCCGGACGAATAAACGTCCCCA 20669 28 100.0 32 ............................ CCGCCAAGGCGCTACCTGTTGCCCAAATGCTG 20729 28 100.0 30 ............................ TTACAAACGGTTTAACTACTGTAAGTGGTG 20787 28 100.0 32 ............................ TATGTCCTATACGTATATGGCGCAAATGGTTG 20847 28 100.0 32 ............................ TTTAAATCAATCGCCGATGTCTTTGGCGATGT 20907 28 100.0 32 ............................ TGAAACATGTTTGCTTATAACTAACAATATTA 20967 28 100.0 32 ............................ CTCAAACTATAGCAAACTTGCTACATAAAAAA 21027 28 100.0 32 ............................ TTTGCTTATTTCATCGAATTCGCTGTTTACTT 21087 28 100.0 32 ............................ TTTGTCATGTGCATGACAGAAACAGTAGGTAT 21147 28 100.0 32 ............................ CATTGTTATGTGAAAGTATGGAATGACGAGAA 21207 28 100.0 32 ............................ TATCCGCATCGTCTGTTTAAAAATCACTGAGT 21267 28 100.0 32 ............................ GCTAAACTCTTTGTGGGTCTCTCTCTTTGGAT 21327 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 21387 28 96.4 32 ...........T................ TGAATCAATCACCGCTGCAAGGGCGGCTTTAG 21447 28 96.4 32 ...........T................ AATTGGGGTACTCCTCAGAGCGCACTTGTGCG 21507 28 96.4 32 ...........T................ ATCCAGTGGTGACACCTTCTGTATAAGTGCAT 21567 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 21627 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 21687 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 21747 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 21807 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 106 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //