Array 1 3897-1353 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXW01000116.1 Crocosphaera chwakensis CCY0110 1101676644434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 3896 36 97.2 39 .................T.................. TTTAGCCAAAATTCAAAAAGTACGAAACCCTAGCAGTTC 3821 36 97.2 36 .................T.................. TTTTTTCGGATTTGACGTTGACGTGGACACCCCCCA 3749 36 97.2 42 .................T.................. TACGAGTTTTTTTTGTTAAGCCACCTCGAAGAAGGTGGTTAC 3671 36 97.2 37 .................T.................. GGAAACGATATCTACAAAACTAAAGTGGACGATGATT 3598 36 100.0 36 .................................... TGTTTCAATACAGGGCGTTGTAACCCAATATGGGTT 3526 36 100.0 39 .................................... CAGATGTTTCCACGGCTTTAATTCCAGATGGAGCCCTTC 3451 36 100.0 35 .................................... TTGGGCATTTAATGCGAACTGATGGCAAGCTAATT 3380 36 100.0 40 .................................... TCTGAATCCAAAACTTATCTAAGTCGCTAGATAAGTTATA 3304 36 100.0 39 .................................... ATTAGCTCATTCTATGTTGACGTTGATCAAAGAGTCCGA 3229 36 100.0 36 .................................... GTTGTACAATCAGAACCTTCAAGGAAACTAAAAAAA 3157 36 100.0 43 .................................... TAGAAAGCACTTGGGGTCGAAACACGAAAGAACCTTTCCCTTA 3078 36 100.0 40 .................................... ATTATTGACTGGTTTTTTGCATTCGGCTATAGGCTACTTC 3002 36 100.0 39 .................................... CCTGTCTTACAAGGTAGTGGTTTTACTTTTCAACTGAAC 2927 36 100.0 39 .................................... TTGAGTACGACTCAAGACCCGTGTCCGTGAACGATTTGG 2852 36 100.0 35 .................................... ATTCAATACGCCTGTTCCTACACGGAGCGTTCTAT 2781 36 100.0 32 .................................... GTGGAAGATAGCCATGGCCGTTATTCCGTCCA 2713 36 100.0 37 .................................... TTTCATTAAGTATTCCGGCATTCGCTGGGATGCTGAA 2640 36 100.0 37 .................................... AATGGCTAAGCGTAGTTTCACGCCTGATGAGTTAAAA 2567 36 100.0 38 .................................... GAGAACTTCAACCTGGTGTTGGAGCATCTGATTTTGCA 2493 36 100.0 37 .................................... GATCAACTAAAATCAATCCCAAACGAAAAAGTGCTAA 2420 36 100.0 49 .................................... CCTGCCCCATCGGTAACCCCGAAGGAACGTCGGCAATCAACTGCGCCTA 2335 36 100.0 38 .................................... GAGTTTTGGTGCCCACAACAGTTTTTAACGGTAGTGGA 2261 36 100.0 37 .................................... ATTAGTAAACGGGGAAGATTTTTCCGTGTGCTAATTT 2188 36 100.0 37 .................................... GATAATTTAGTAGAGCTGCCTGATGGCACCTACATTC 2115 36 100.0 36 .................................... TTTGCTGAAATTTATCAACAGGTTGGCGACTGGTTA 2043 36 100.0 35 .................................... AATGGATGCAAGTAGTCTTTTAGGCGTAATGCGCA 1972 36 100.0 35 .................................... TATTGTTGATTATTTGGCGATGATTGATACAGTTC 1901 36 100.0 35 .................................... TTGGAATTAAACACAGGAAACACGCTTGAAACCGT 1830 36 100.0 33 .................................... AACAGCCTCACATGGCTTGTTTTTTATTATTCT 1761 36 100.0 40 .................................... GCTGAAATTGTTACAGGGGGAGTGAAAGACCTTTTGGCCG 1685 36 100.0 38 .................................... ACCAAATAGCTTGGAGAATTAAAAAATGTTATTATCTT 1611 36 100.0 39 .................................... ATAATTTTCTTTATTCCCATGAACGTCGTGAGATATCCA 1536 36 100.0 36 .................................... AATTAAACAAAGATGTTGTTTGCGACTTAATAAAAT 1464 36 100.0 40 .................................... AAGGATATGTATGAAGTGATGGCTCAAACCCAGCTTTCGG 1388 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 35 36 99.7 38 GTTTCCATTCAACTGATGTCCCCTGTTAAGGGAAAG # Left flank : AATCAATGCTAATCAAAACTTAGAAGCTGAGGTCTTTTCTCCTACTACTTGTTCAATTTATGCTGTTCCCGGACCTGATCTTAATCCCATCGATGAATCTGAGCAAGACTGGCAAAACATCCGTCGTAATGAGGAAACTCGTGGGGATGGTATGAATCTTATTTACAAAGATAAATATAAGCGAAAAACTGATGTTGGTGGCAATGCTGGTCATGGTAATGCTCATTGTTCTTGGGTGAGTATTAGGATGAGCAACACTCCTCACCCAACAATTGATACTGACACTCAAGAAATTGTTTGTTTATTTATGGGGAGACAATCCTCTAATTCTAATCATTTACGTCCTCAGTTCTTAAAAGATTTATCTAGTATTTTAGGTTCAACTTTCTTATTTGGTTTGCCTACATAAAATCTATTTTAATCTTTACTAAATTGAGTAAAGTTAGATTAAGATTTCCGATTTATCAGCCCGCTAATTTGAAAATTAGCGGGTATTTTTA # Right flank : AGTTCGTCTGAGAGCCGTTACCCAGAGCGACTTTGAGGAGGGCAGATCCACGCAACCAATGTAATAATTGTAATACAACTAGCAACATGGCACAACTCGTAACCCTCAAAAGCAGGCCAGGTAAGGCGACCACGCAGTTCAACGAAAGAATGAGGGTTTCAGAGATTTGCCGAGGTGCGTGGATCATTTTTTCTCAAATAAAATACTTAATTTTTAAATATAACATCTAAAATAGATTTTGTTAATCTTTGAAAGAATAAAAATATTAATACTTTTGTGCTAATTGATTGGTGATCGCTTCGTGCTGATGTAGCTAAAGAAAAAACAAGAAAGGAATATTTAGCAATACGCCGAGAAGCCCCGTGCTGTATTGAAAATCAGCATCGGGGTGCTTCGCGCGTCTTCGACGGGATAGGCGGTCATCTGAGGGGTTCGATGCCCCGAAAGTTGACAAACTATCGCTTGGTGCGCATAATCTCGCCGTACGACGGCGAGTTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTGATGTCCCCTGTTAAGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3208-4618 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXW01000103.1 Crocosphaera chwakensis CCY0110 1101676644355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3208 36 100.0 33 .................................... TAGCAACTTACAATCTTGAGCAAGAGTATTCAC 3277 36 100.0 32 .................................... ATGGACACGAATTCTATGATTCCCACCCCTAC 3345 36 100.0 36 .................................... TTAATGCTCAGATTTTACGCCTGATCATTGCATAAG 3417 36 100.0 38 .................................... CCCCTGATCCCGACGGTGGTTTTAACCTTGATCCTGAC 3491 36 100.0 43 .................................... AGGAAATAAAGGCAAGTTAGCTAACTATGAGCTATTGTCTACT 3570 36 100.0 39 .................................... TTATTCCAGCTTTTATGGATTTTCTCAAAAGGTTTGGGA 3645 36 100.0 35 .................................... TAGCTGCGTCAGGTGTAGCTTGCGCGATAGTCCTT 3716 36 100.0 39 .................................... GGCTTCAGATAGCAAAATCTTTCACCCATGAAGAGTGGA 3791 36 100.0 37 .................................... ACGGCAGTTTACTTCCTGACCCCGACGGCAGTTTACT 3864 36 100.0 38 .................................... ATGAGTTAGTCAAACAAGAGGAGGATTTGCAAAAGAGA 3938 36 100.0 33 .................................... GCTTGGGAACACTTCTTTGGAGTGTTACAATTA 4007 36 100.0 37 .................................... CAGAAGACGTAACAGTCAGTATTTTTTCAACGAAAAA 4080 36 94.4 38 ........................AT.......... AAGTAAAAGACGGGGACTTTTCCAATTTCCAATCTGGA 4154 36 94.4 35 ........................AT.......... TACCGACGTATGACGGTTTTTAATTTTTAGTATTA 4225 36 94.4 38 ........................AT.......... AAGAAGAAAGTGACCAAAGGTGCATTCGGCGATAAGTT 4299 36 94.4 37 ........................AT.......... CAGAAATCGTTGCGTTTGGTGAGCTTGACATCTTTTT 4372 36 94.4 38 ........................AT.......... TTAAAATTAAAGGTAAAAGTAAAAGTTGGAGACCAACT 4446 36 91.7 33 ........................AT.....A.... AGTTCATTCTCATCATCTGACGATTCACCTCAT 4515 36 94.4 32 ........................AT.......... GACAAATGTTTGATGAACTTGGAACGCATTGT 4583 36 94.4 0 ........................AT.......... | ========== ====== ====== ====== ==================================== =========================================== ================== 20 36 97.6 36 GTTTCCATTCAACTGATGTCCCCTGCTAAGGGAAAG # Left flank : GGCACTTATTTAGCACAAGGTACAATCAATAACAACTCTTGGAGATATATTCTTCGTCAAGACAATCGATTTTGTCTTGAAATAGCCAATGGCCCAGCCAGTCCCTATGCTGGAACAATTGAGGTTATTGTTAGTAGTCTTTCTGTTGTTAACAATAAGGTAAAAGTGGATGCTACAGGACAGTATATTACTAAAGAAAAAAGCAGTAATGTTAATTACTATTCTTTTGATGAAGCTGACAGACCTTGGGAGTGGATTCGCTCAGAGCTTTTTAATTCCTCCCCAGAATTATTAGAATGCCTAAAAGTGACAATGTTTATATTAAAAAAAGATGTGACTACGTTGGAGGCTATCAATTTGAGCCTTTTATTGACGCTGATGAAAAATACAAGCAAACAGCCCTACAAAGGTGTCGAGCGGAATTCTTATAGTTATTGAATAAACTCAAATCCTTTTTTTGTTAAGCATTTTTGGGTGGTAAAATACCACCCTTTTTTGTT # Right flank : GAGTTCGTCTGAGGAGCCTTACAGGGAGTGGGTTACAGAGGACAAATCGACGCACCCCCTTAGATCGAAATAAATTTCCCTCAGAAAATAATTTTTCGTAACCCTCAAACCCTGATGGTGTAAGGCATCGACGCAGGTCTACGAAAGAATGGGGGTTTGAGGCTATTGGGCTACCTGCGTCGATTCGGAGAAGATAATGAGAACTTTATTGAATTTTCAAGGTTCAAAAAGTGCGGTTTAATTTCTAAAACCATCATATCACCATTTTGATTGGCGATCGCAGAACAACACTCGATGATCGCCCCTTGACTTCTTAGTTAGTGCCGAACTATAATAAAATACATCAGCACTAACCTAAAACCAATGTCCCAAGCTGCCATCAAAGCCCGTATTGCCCAACTCCGAAGCCAAGGAAAAGTCGCACCTCCCAATACCTGGATTGGAACAAGCAGTATCACAAAGAAAAACGGGAAACGATACACTTATTACAGGCTAATGAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTGATGTCCCCTGCTAAGGGAAAG # Alternate repeat : GTTTCCATTCAACTGATGTCCCCTATTAAGGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 14488-14085 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXW01000070.1 Crocosphaera chwakensis CCY0110 1101676644557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 14487 37 100.0 32 ..................................... TGTAGTTGTGACAACTTGCCACTCATAAAACA 14418 37 100.0 37 ..................................... TTTCTGTTAACGAGACGGGCACTTCAAGTTGGTGTCC 14344 37 100.0 34 ..................................... AGTTATTGCAACGACTGAGACCATCTATCACGGC 14273 37 97.3 37 A.................................... GAAAAATAAACGCTAAAGAGAATTTTGAGACCTATAA 14199 37 100.0 41 ..................................... AAAACGGTTTCCTCGAAGTTTTCGAGAGAAAGTCCATGAAT 14121 37 91.9 0 ........C..........................GT | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 98.2 36 TCTTTCCTTTACCCTTTCCCCGTCAGGGGATGGAAAC # Left flank : CCATTTTTAACAACATCAGTTGAATGGCAATGAGGACATTCAATAGCTAACCAAACAGTCATCGAAAAGTTAATTTGAGTTCTTCATTTATTACTTTAACTCAAATCCAATTCTTAATCATCCCTCTTTCAACAGATTTATATCACTACCAATCCATTGATAATTTTTATTTTTGAATGAGGATATTATTAGATTTTTACTATTAAGAAATATCAAAAAACTTCAGTTTTTTGGGTAAGTTTAATAGATTTATGATACTATTAATTCATTAAATAAAGAACCTTGAAAACTTAATAAAGCTTTCCTACCATTCTCGAAATCCACGCAGGTAGCCCACTAGCCTCAAACCCCCATTCTTTCGTAGACCTGCGTCGATGCCTTACACCATCAGGGTTTGAGGGTTACGAAAAATTATTTTCTGAGGGAAATTTATTTCGATCTAAGGGGGTGCGTCGATTTGTCCTCTGTAACCCAGTCTCTGTAAGGCTCCTCAGACGAAC # Right flank : GCGCTACGAAAGCGTGCGACCGCAATGCTCTTGGAGGAGAAATCCTCCAAGAGATGGTGCATTCCCTAATGCACTAAGGCTGACTCAGCAGGCAGGGGACAATGAGCGTTAACCCGTCTGGAGCCTGGGGAACAAGGGACTTTCATGCTGAAACCCTGTTACAGTATGAGGCTTCAAGCCTAAAGCTAACTATGATGAGAAGGAAAAAAGCGATCGCAAAAGGGATTGTCTTGCGCTACGGTGTAGATGTAGAAAGAAGCAAGTGGGTGAAAATGCTTGTAACCCTAATGGGGTGAAGCTTAGGGAGGGTTCGAGTTTTTGAGCCTGAAGCGCACCAGTCAGAGTAAGGGTTTCAGAGGTTTTGGGTTATCATCGAAGAGAGTCAAAGGCAATTTTGAAAGGCTTAAGCGCAAACGTACCTTGAAAACCTCATTATATATAGTTTCTAAAGCTCCGCAGTTTCAAAACACTTATTCCCCTCACGGGGATGGAAACGACAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCCTTTACCCTTTCCCCGTCAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //