Array 1 93670-91569 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMBP01000002.1 Longicatena caecimuris strain DSM 29481 Ga0244710_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93669 33 100.0 34 ................................. TATCAAAAAATGAAAGGAATATGATATTTTTGTG 93602 33 100.0 34 ................................. TATTGCTAAATTATTCAACGTAACAGGTACAAGT 93535 33 100.0 33 ................................. AATAAAGGTGGATAATGATTGCTTAATCGTTTT 93469 33 100.0 34 ................................. TGTGATTTCTCTTTTTCTTTTAGTGATTTAATAT 93402 33 100.0 35 ................................. ATAGGAAATTTGTTTATTGCAGTTGTGAACTTCGC 93334 33 100.0 33 ................................. GAGCCCTTTTACTAAAACAGCTGGTACACTGTA 93268 33 100.0 33 ................................. AATTTTATAGGAATTGAAATAAATGAAAAGTTT 93202 33 100.0 34 ................................. TTTTATTTGTATGTGACCATTTATCAGATCCTTT 93135 33 100.0 34 ................................. TGATTTAGCTGGTGCGGTTTCAGGATGGCGAAAT 93068 33 100.0 35 ................................. AATCATATATGATGCCCTTGCCCCAGCCGCTTTGG 93000 33 100.0 34 ................................. TTTATCAAAGAATTTTAGTTTCTGATCAACTGTA 92933 33 100.0 33 ................................. TGCTAACGTATCTAGTGTTTCTGGTGCGGAGTT 92867 33 100.0 33 ................................. TTTTAATGCTTTTGGAACTTTTGAATACTCTAG 92801 33 100.0 33 ................................. ATATTTTCATATGCTCTTAAAATGGATTATGTT 92735 33 100.0 34 ................................. ATTCAAGAGTGCTCTCTGTGATCTTGCAAAAGAG 92668 33 100.0 33 ................................. ATCCTTAAATTCATCAGCGAAATCGACTTCTCC 92602 33 100.0 34 ................................. AAAAAACAAATGCTATTGCTGGTGTAGGTGCAAC 92535 33 100.0 33 ................................. TTTCACATAACCATCTTCGATAATGATGCTGCA 92469 33 100.0 34 ................................. ATCAACCTCCATCATTTTATAAGGGCAATATCTC 92402 33 100.0 35 ................................. ATAAGTAGGAGCTTCATATCGTCCTCTGATGCTCC 92334 33 100.0 33 ................................. TTGTCTGTTTTGGCCGCTTTCGGTTTTGCTTCT 92268 33 100.0 34 ................................. TTTTTTAATATTTGAGCTAGCATGATTAATCTTT 92201 33 100.0 35 ................................. ATAGGAAATTTGTTTATTGCAGTTGTGAACTTCGC 92133 33 100.0 34 ................................. GGATATAGTACAACTAATAGAACGTTTAGCAGAG 92066 33 100.0 36 ................................. AATAGTTAATGTCTTCTTTTCTTTGACAACATCACC 91997 32 97.0 33 .................-............... TTTTACAGAGGCACCAGCACCAATTGTGTAGGA 91932 33 97.0 33 ...A............................. CGGAGATGATATGGGATGTACATCATTGTATGC 91866 33 100.0 33 ................................. GTTCGTGGAAATGATGATTTTTTCAGGATGATG 91800 33 100.0 34 ................................. CAGTCATATATGTAAAGTGCATATTGAGTCCAAA 91733 33 100.0 33 ................................. GTCCAAGTGATAACTTATTTGTTACCTTTGACG 91667 33 100.0 33 ................................. TCTTTCGACGGACACCATCGAGGTGATGTCTTG 91601 33 93.9 0 ..............T................T. | ========== ====== ====== ====== ================================= ==================================== ================== 32 33 99.6 34 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGAAGAAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAGAATTCAGTGTTTGAATGCAATGTGAATCAAAAAGAATATGTTGAATTGCAGCATATATTATCTAATGAAATCGATGAAAGTAAAGACAGCCTACGATTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATAGGAGCAAAACCATCATTCGTTGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTAAAGCTAACATAAATTTCTTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGGTTTTTATGCTTTTATTTGATAGAAATTCAATTTTAATGTTAATTTAATGCAAATGTTGTTACTAATGTCAAGATTAAAAGCAATATTTGCT # Right flank : TGTTGATTTTAGATGAAAAATTGTTGAGGATAATCGGTCGTACCTCTTACGAGAAATTCAGATATCTATATGTAAGTATTTACAAATAAAAAAGGCAAACCCACTTTGGATTTACCTTCCATAATAACGTATTATTCTGCCTTTTCTGTAACATCCTTCATCTTCTGTAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAGGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCAATTATTAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTGATAATAGGAACATAGAGTCCAAAAATCAATAATAAGGTAGAACCACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 106851-106161 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMBP01000002.1 Longicatena caecimuris strain DSM 29481 Ga0244710_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 106850 31 100.0 36 ............................... AGCAGTTCTACACAAACCATCAGGTAAGGAACCTAA 106783 31 100.0 36 ............................... AAAAATCTTATTAGTACCAATATAACGGTTGGTGAT 106716 31 100.0 34 ............................... TCATGTCCTTTAATCGCAGTAGAGTCATCCATCC 106651 31 100.0 35 ............................... CTAATACTACATGAACTTGGACATATATTTTTACA 106585 31 100.0 33 ............................... CTTTAGGTTTTTTGCAGTGGCTCTTTCCGCACG 106521 31 100.0 37 ............................... TTTAACATATGTTGTTTTACCTCCTGCTGGTGGACCA 106453 31 100.0 34 ............................... CTGAAAGAAACATTGAAAAAGGAATCTGCAAAAG 106388 31 96.8 34 .......C....................... CCGAGTATTTACTTAGTGCTATCACTATGGAACG 106323 30 80.6 36 ........C-.CG...T.T............ ACAAAAAAGTAGCTCATAAAAGTATCATCTTTACAG 106257 30 77.4 36 ....T...C-.CG...T.T............ TGCCGGCGTTGCCAATTCGTGATATTCGTTTCTATT 106191 31 87.1 0 .......C....G...T...........T.. | ========== ====== ====== ====== =============================== ===================================== ================== 11 31 94.7 35 GTCGCATTTTGTAAGAAGCGTGAGTTGAAAT # Left flank : TTACGAAGGAACGCTTAGAGGCAGTGCGTGAGGCAGATGCAATCTTGCGTGAGGAATTCCATAATGCTGGATTGGATAAAAAGGTTTGGCAGTATTTCACAGTTGTGCCTGATTTTAAATCTGTAGGTGTACGTGATAATGCGAGATGTTTTGAATATCCTGTGATTTTACGTGCGGTGAATACGGTGGATGCTATGACGGCGACGATTGAGCAGATTGACTGGCCGGTATTGTTGAAGATAACGGATCGTATCTTGAAGGAAGTTAAGAATGTGAATCGTGTTTGTTATGACCTGTCACCAAAACCTACGGCGACCATTGAGTGGGAATAAAAATCGATATTAGATAAATTGGTGCGAATAACAAGCGTACAGTAGAATGCTAGGAGATTCGCACCAATTTGTCATATTAATATTGATATTTATAGAGCTATTTTTCTAAAATTATATTAATGTTAAGCGTTTCTTCTTTAAATGATATGATTTTAATGAAAATTTGCT # Right flank : GTTGCATTTTGATTCATGTAAATTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATAAATCCAAACACACCAAATAATTTACCGCCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGCTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAATTTATGTTGCCCTTGGACATAAGAAAACAGAATCCAAGGTATCATAATACCTCCGGTACCTAATACGGGAAGTACATCAAAAACCGTAATGCCTAAGGCTATCAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGCCTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATATTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTTTGTAAGAAGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTCGCATCTTGTGAGAAGCGTGAGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //