Array 1 1265157-1267625 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024320.1 Limosilactobacillus fermentum strain ike38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1265157 29 100.0 32 ............................. TTGAGCCACTCACGGCACCTGTTCGTGTGTGT 1265218 29 96.6 32 ............................A AAGATATGAAACGCCGCGATGATTTTCTCGCC 1265279 29 96.6 32 ............................T TCGTTATTCATTTCGTCTTTTCCTCCAATACT 1265340 29 96.6 32 ............................T ATTGTCGGCACATCATCAGAGCGAACGACGTT 1265401 29 100.0 32 ............................. GACAGTGGCAAACCAAGCAAAGGCCAACGCAA 1265462 29 100.0 32 ............................. ACGCCCAGATCGATTGTATTGCCACTGCTATC 1265523 29 96.6 32 ............................T TTGGCGTCTTTCCTCTTCAAGACAGATTTTGC 1265584 29 96.6 32 ............................T CCCACATCGGACGTCACCTTCGTGATCCCGTT 1265645 29 96.6 32 ............................T CTGTTGATTGTGCCAAAGTGAAAACTAGTGTG 1265706 29 100.0 32 ............................. CTTCGCTTGGATTTGGTCGGCTTGCGTTTTTA 1265767 29 100.0 32 ............................. GGTACCTTCTTCTAATTGGAATTCCTTGTATG 1265828 29 100.0 32 ............................. ATGATTGGGGCGTTATTTGGAGCTGTTAAGGC 1265889 29 100.0 32 ............................. CAACGGACTAATGTAGTCTGCTTCGCACGTGT 1265950 29 96.6 32 ............................T AGCGCTCGGCACTTCAATCTTGGCGTGTGGGC 1266011 29 96.6 33 ............................A CCGAAACGTCCGTGCCATAGCGGTCACGAATCC 1266073 29 96.6 32 ............................T CTTGCGTTGTGCTAGTGTCGCCTTCAGTAGTC 1266134 29 100.0 32 ............................. ACTAAGACGGCGTTTGACAGCGATGTGGCGGA 1266195 29 100.0 32 ............................. GGATTACTACACTGCAGCGCAGATGGACACTA 1266256 29 100.0 32 ............................. CTGTCGGCAACGGTGGACGGCATCCAGACACA 1266317 29 96.6 32 ............................T GGTGGAAAGCTAGATGGGTACGAGTGGATCCT 1266378 29 96.6 32 ............................T TGTTCCCAACCTGGTTATCAAGGTAACGCGTG 1266439 29 96.6 32 ............................T GGTATCGTCAACGACAAAAGTCTTACCGTTGT 1266500 29 100.0 32 ............................. AACCCTTTTCAAGGACGTACCAGGTGAGAAGA 1266561 29 93.1 32 ..................T.........T CTCAAGTGGGGACAGCGTTACCTATCTTGGAG 1266622 29 100.0 32 ............................. TTATGGCAACAATATGATCTATTCAATGTCGG 1266683 29 96.6 32 ............................T GTTGGTTCCATTGTTAGTCCCCCAGTCGCTTT 1266744 29 100.0 32 ............................. TTCATGCTTGAGTGCGCCAGCCGTAACTGGCT 1266805 29 100.0 32 ............................. ATGGGGTCAGTCTTTAATGGCCGACAGCTTGA 1266866 29 100.0 32 ............................. GGTACAGCTACCCGCGCTTAGTGGAGACTGAA 1266927 29 100.0 32 ............................. CTTATGCGCCACCCATGGTTTGGGCTCTTATT 1266988 29 93.1 32 A...........................T GTTGGTTCCATTGTTAGTCCCCCAGTCGCTTT 1267049 29 96.6 32 ............................T TGGAAATATCGTGAACAAACCATCCAAAACAA 1267110 29 96.6 32 ............................T AGATTGGCCATTACTATCCTCCTCATTAAGTG 1267171 29 100.0 32 ............................. AAGACTTCTTATGATAGTCGTGCGGAGACCAT 1267232 29 100.0 32 ............................. AACTTCACCAGGACACGCACGATTACACGGTG 1267293 29 100.0 32 ............................. AGCAAGGACAATCCAGACGTCAGCATGTATGG 1267354 29 96.6 32 ............................T CACCTTCAGCACGCCTGTTTCGGTGCTTGGGC 1267415 29 96.6 32 ............................T AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1267476 29 93.1 31 .............G.......A....... GACATGTGGAAGAGGCTGATCGCCATCCCCG 1267536 29 79.3 31 .......T....A.....A..A...G..T GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1267596 29 82.8 0 ...T.......TC.A........A..... | T [1267599] ========== ====== ====== ====== ============================= ================================= ================== 41 29 97.2 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAGCGAAAAGTTAATCAAGAAGGAATTAGCTTAGAAGTTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGTAATAGTGGTTGGTTATAATGTTACATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTTTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CTGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1725662-1724502 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024320.1 Limosilactobacillus fermentum strain ike38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1725661 36 100.0 30 .................................... AGGCTACCAGTTTAACGCAGTCGTTGACTA 1725595 36 100.0 30 .................................... TTTGTAAAATTGCTGCAGGATAAGTACTTA 1725529 36 100.0 30 .................................... ACGAGCTTAAGCGATGATCAACGACGGGCG 1725463 36 100.0 30 .................................... TAGGAAACAATTCAACAATTACCTTTGGTA 1725397 36 100.0 30 .................................... AGGTTACACAATTTACAATCCACACGTCAG 1725331 36 100.0 30 .................................... CTGTTAAAGATCAGCCGTCCACGCTTGCAA 1725265 36 100.0 30 .................................... TCAACGATCCATGGTAGCGTGATTGTTCCT 1725199 36 100.0 30 .................................... TAAACGTCGTTAACGATTACTTCGGGCGCC 1725133 36 100.0 31 .................................... TGGCTCATTTAAGTAGCTTTCAAACTTTGTA 1725066 36 100.0 31 .................................... TGGCTCATTTAAGTAGCTTTCAAACTTTGTA 1724999 36 100.0 30 .................................... GATGACGTTGTTACTTGTCATATAACCATC 1724933 36 100.0 30 .................................... TGTCAAAACGACAGAAAATTATATACATTC 1724867 36 100.0 30 .................................... CTAGTTGATAATCTCTACTAAACGGGCATA 1724801 36 100.0 30 .................................... AACAGCACGAACAGAAATTCATCAATACCC 1724735 36 100.0 30 .................................... AACAGCACGAACAGAAATTCATCAATACCC 1724669 36 100.0 30 .................................... GAGAGCAGACCGAAAAACTCAAAAGCTACT 1724603 36 100.0 31 .................................... AACCGAATATCGAGTTAGAGTTCCTGGTTCT 1724536 35 83.3 0 ....................T......-.TT..A.T | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCAAGATAGGATGAATGACCTTGCTCGTGAGATTTACTCAGAAATGCAAGATTCCCTGTTCGAATTCGATTTGCCATTGGAGGTCAGATATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATCAAGTATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAGGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTACCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTAATGAGAAAACAACG # Right flank : TATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGGGGGAAAGATAAATATTCCCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAGAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAGACAAGACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //