Array 1 424181-424748 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYI01000001.1 Serratia grimesii strain NCTC11543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 424181 28 100.0 33 ............................ TGGCGGCAGCGGGGGCAATAGCGAACCTGGCGA 424242 28 100.0 32 ............................ ATTCTGGCCCATACCCCCACTCAATAGGATCG 424302 28 100.0 32 ............................ TACTTAACAGTTACGCCCGCTGGTATTTCTAA 424362 28 100.0 32 ............................ TATTAATATGACGGCCTGATATGTAGCAGTAA 424422 28 100.0 32 ............................ CGGAGTTATCAGCAGGTTTACATCTGCCCAAA 424482 28 100.0 32 ............................ GCACCGGCATAGCCAGCTTGGCGCGGAGTTCT 424542 28 100.0 32 ............................ GACAGGCTGCGCCTCACGGTTAGCCAGGATTT 424602 28 100.0 32 ............................ GGGCGCGCATCAAGGCCGCCAAGGCGCTGGAT 424662 28 100.0 32 ............................ TGCTGCAAGCGTCTGCCCTGGCCGTTGGCCTG 424722 27 85.7 0 .....................-..C.GC | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCAGAGCCGTTTAACCGGCTTTAGCGTTAACGTCCGGCAGTAAATAATCCAATGAAAGAGGCGGGTGGCTCACCAGCCTCTCTTTTTGCGTTTTGCTTAGTTGCTTGACCCGATATTCCAGTCTCAATGCTTTTGAGCGATCCCCCGCCTGACAGTGAAAAGCCAGCACCAGTTGGCCTTTACCCCGTAGCGCCTTGGCCCCTTTGCCCGCCTGATGCTGCGCCAGCCGCCGCGTTACGTCGGTAGTAATGCCGGTATACAGCATGCCGCTGGGCATACGCAACATATACAGGTGCCAGATACTGGTGTTGGTCATATAAGTTCCCGCAAAGAATTGAGCGTTACTATAGTCAACCCGGTCCCATCGCTGAACCCTTTTTTCTGGCCTAATTTAATTCATTGATTTTTAATGTCTTTAATCTGAGGGTGAAAAAAGCCTTTTTGACCAAATAGCGATGTTACTCTTCAACAATCAGCCAATTAGCGCTAATCTTCAACG # Right flank : CGGTGCGGACATCCAACGCGTTGTGGGTCCCAAACAAACGGCCACGTAAACCATGAGAGCAATGAAGATGAAAGCGTGTACGGTGTGGGGAATATTAGTTTTCAACTTGAAAACAACCCCGTCAGGGGCTACAGTGTTTTCAAGATGAATACATAAGCGAGGGATTCGCGGTGCATGTGATCAGTAGACAGCCCTTTAATGAGGCTGCAGGGAAATACCCTAATAGCGCGTTGGCGCTTCTTGATCTGATGAGGGTTCTGGAAAAAAAGACCTTCAACAGCCCGGATGAGATGAAAAGAGCGATCCCGTCACTGGATAACTTCAAGTACCGTAAAAAGTGGTGGGTGATTGATGTGTCCGGGAACACGTTGCGGCTGATGGCCTTCATTGACTTTGAAAAGCAAAAGGTTTTTGTAAAGCACATTGAGACTCATGCCGAATACGACAAGTTAACAAAGTATTATAGGGAGCATAAAGAATGACTGTTGCCACTCATATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 434769-435877 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYI01000001.1 Serratia grimesii strain NCTC11543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 434769 28 100.0 32 ............................ AATCTGGCCACTCTTCCAGGGGCTGGACAATT 434829 28 100.0 32 ............................ TAACATTACGTTACCAAGGGTCTGAGCAGTAG 434889 28 100.0 32 ............................ TGGATGCGTACCGTACTGGCGTCGTGCTGTTC 434949 28 100.0 32 ............................ TCGGCCAGATACGGTGGTATAGAAGCCGACAG 435009 28 100.0 32 ............................ TGGCCCCAATACTGACACTGACAAGCCCAATG 435069 28 100.0 32 ............................ GTGACCCGTCACGATGGGAAGCAGAGCACGGC 435129 28 100.0 32 ............................ CGTATGGCCGTCGGTGACGGTAACGGCACGTT 435189 28 100.0 32 ............................ AGTGCGCGATTGTTCGGGATCATACGCACAGC 435249 28 100.0 32 ............................ TTCCGCGCGCCCGCGTGTACTGACATCACAGC 435309 28 100.0 32 ............................ CAAAACGCGGTAACTGTAGCCGCGTCGCAAAT 435369 28 100.0 32 ............................ CAAATTGTTGGCGCTTGATATCGACAGCATTG 435429 28 100.0 32 ............................ CACGTTGATGATGATCTTTGTGATGCCCTGTT 435489 28 100.0 32 ............................ AGTGCAACCGCTACGCGATGCCACAGAGTCAC 435549 28 100.0 32 ............................ TCACAGTAACCATGCGTATCATGAATGGGGTG 435609 28 100.0 32 ............................ AGACATCAAAAAAATCTGCTGGGTACCAACCA 435669 28 100.0 32 ............................ AATCAGTGCGGTAATTGGATTGCGGCATAACA 435729 28 100.0 32 ............................ TTAGCCAAAGTCGGGCAGTTATGCGGCTTGAT 435789 28 100.0 32 ............................ TGATGATTTCGCCTGGCACCCAGTAAGTAAAT 435849 28 85.7 0 ...........C..C......A...G.. | G [435873] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGATGGAACTTCAGGAAAGCGGTTGGCTGAAAGGGTTGCGCGACTATACCGGCGTAGACCCCATTCAGACTGTGCCAGCGGGCGCTCAATACCGAACGGTCAGCCGGGTTCAGGTCAAGAGCAGTGCAGAGCGCCTGCGAAGGAGGTCGGTCAATAAAGGTTGGTTAACTGAGGAACAGGCCAGAGAAAAGATCCCGATGACCAGTGAACAACGCTCTTCACTTGCGTTTATTGCGTTGAAAAGCCTCTCTTCGGGGCAAAGTTTTCGCCTGTTTCTAAAGCAGGGAGCATTGCGGAAAACGCCGGTGGAAGGAAAGTTTAGTTTCTATGGCTTAAGCCCATCAGCCACGGTGCCATGGTTCTGACCCTATATTTTGTGGCAGGGATAACTTATTGATTTTATTATCTCTGCCCCATGCCTGGAAAATTTGGGTTAAAGCATGAAATAACCAATATTTTATTTAATAGTCAGTTTGTTACTGGTTATTTCGTACA # Right flank : AGCCTTTCTGGACAAGGATATACAGCAACGTTGGTGGCCAGGGACGGATTATGATGGCATGTTCCCCGTCGTAATCCTATCCCCGACCACCCATGGCTTATTACCGCTAGCCTTTTTTCCCTGCCATTTCAAAACGAGGTGAAACCAGACCGTACAACGTCCAACCGAGGAAGGTGGCAATTGCGCCCCACATCATGGCTTCTTCGCCGGAGCTGTAGAGTGCATAGAAGCTGTAGAGTGCCCCAATACCGGCGATGATATTGGCAATCCGCGCTTTGTTCTCCGGTACTTTTGCCACCTTCTGAATGATGATCAGCGCTGCCATCGACAAGATGTAAGGGATGATATTGGTCACCACAGCCAGATTCACCAACACGTTGAACTGCTTATTCAGCGACGGGCTGATGGTCATCAGAGACAGCACGCTCTGGATCACCACGATGGTCAACATACCTTTAACCGGAGCATCGGCCTTGCTGAGTTTGGAGAAAATTTTCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //