Array 1 1532-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAY01000061.1 Lactobacillus helveticus strain LMG 22465 seq61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1531 29 96.6 32 ............................C GAGGAGGTGGGTAATTGCAAAGGAAACGAATT 1470 29 100.0 32 ............................. CACTCTGAAATAGCCGGCCTTAACTTTTGAAC 1409 29 96.6 32 ............................C TATTGACGGTCTATTTGAAAATTACTCATACA 1348 29 96.6 33 ............................C GTTATCTTGGTTATGCTGGACTAAACCCTGTTG 1286 29 100.0 32 ............................. TACATCGTAGAAGTAGAGCGTGCCGCCGCTGT 1225 29 100.0 32 ............................. ACCAGGGTGCGGTATTAGTGACAGCGAACTGA 1164 29 96.6 32 ............................C TTTGCTTCTTATACTGAGCTGGATAAGTTCAC 1103 29 100.0 32 ............................. GTATTGCGCAATGGATATTGATGCTCTTGACA 1042 29 100.0 32 ............................. TCCATGACCTTGTTTGTAGAAGAACCAATTGA 981 29 100.0 32 ............................. CTTCATCTCTAAACATTGCAGCTAAGCCGCCA 920 29 96.6 32 ............................C TAAGAACAATGCAGAGCTACTTTGCAACAGAG 859 29 96.6 32 ............................C GATAAGTTGGACGGCCTAGCCGGTTGGTACGA 798 29 100.0 32 ............................. TAACTAAGTAAAGATTTAATATGTTTTAAAAG 737 29 100.0 32 ............................. ATTACCGTCAACGTTGTAACCTTTGTAGTTAT 676 29 100.0 32 ............................. TAAAAACACTATAAAGGAAGTATAACACTATG 615 29 96.6 32 ............................C CAGTCAAACTATCCGATGGCGACTTTGAAAAG 554 29 100.0 33 ............................. AAAATAGCGGGCGATCTTTACCGAGAAGTCACG 492 29 100.0 32 ............................. ACGCAAATGGAAAAAAGAAGCCGACAGATTAG 431 29 100.0 32 ............................. ACGCAAATGGAAAAAAGAAGCCGACAGATTAG 370 29 100.0 32 ............................. ATTGGTGCTGTTGCAGTTGTTTCCAATTCCAA 309 29 100.0 32 ............................. AGAAATTAGGAGGTTAAAAATGAAGAAATTTA 248 29 96.6 32 ............................C ACTCTGATTTCACCTGGTCTCATACCAGTGTA 187 29 96.6 32 ............................C TGCAGGACATGCTGCAGCTAACACAACTGTAA 126 29 96.6 32 ............................C ACTCTGATTTCACCTGGTCTCATACCAGTGTA 65 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGTTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : CTGCAGGACATGCTGCAGCTAACACAACTGTAAGTAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3419-2597 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAY01000126.1 Lactobacillus helveticus strain LMG 22465 seq126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3418 29 100.0 32 ............................. TGCAGGACATGCTGCAGCTAACACAACTGTAA 3357 29 96.6 32 ............................T AAATGCTTGCATGGTAAATGGGACAAAGAATA 3296 29 96.6 32 ............................T AAATGCTTGCATGGTAAATGGGACAAAGAATA 3235 29 100.0 32 ............................. TTGCTCAACTAGAAGAAATCTATAGCAGTTTA 3174 29 100.0 32 ............................. CATATTAGCTAATTTTTCGGGTTCATTGACTA 3113 29 96.6 32 ............................T CTACTGATCCGACTGGTTTCGCCAATTTGGTT 3052 29 96.6 32 ............................T CACTGATATAGACATCGCACGCATGGCCCATT 2991 29 100.0 32 ............................. TATTCAAGACAATTCAATTGATCTTATTTTGG 2930 29 100.0 32 ............................. TTGCTCAACTAGAAGAAATCTATAGCAGTTTA 2869 29 100.0 32 ............................. TAAAGCAAGTACTAAGTCTGCGGGCAAGCGGT 2808 29 100.0 32 ............................. AAGCTCATAATGTTTTCTAAATTCAAAATACT 2747 29 96.6 32 ............................T TTGATTGCTTCATCGAAGTATTGTTTTTGCAA 2686 29 96.6 32 ............................T CAGCCGGACTTGAAGCAGCGCGTAATTGATCA 2625 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATCCCACTCTGATTTCACCTGGTCTCATACCAGTGT # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCATACAAATTCAACATCAACATTTTTTACTTCCGGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGCAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATGATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGGGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5729-6062 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAY01000101.1 Lactobacillus helveticus strain LMG 22465 seq101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5729 29 96.6 32 ............................C TGTCTATAGATCTTAGTAGTGGGCTTTAATGT 5790 29 96.6 32 ....................A........ ATGCTCGGCTATACTATCAAGCAAGCTGTATC 5851 29 100.0 32 ............................. CTGGTAAATCTAGTGAAGCTTATAAGCGTCAG 5912 29 100.0 32 ............................. TTCGGTCGGGCTCTGCATGTTTTGATTACCAG 5973 29 96.6 32 ............................C TATCCTGACGATGCACCTGTTAAAAAATTCAG 6034 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTAACTTTGGCAATCAATGATTTCTTAGCACTGATGTACTTGCCGTTGCTTAATTTTAAGACTGGAGCACTATCAGTGGGAGTGACCAACTTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGTGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCGAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATA # Right flank : ACAAGTAAGGAATATTGACCGAATCTTTAACTAGAGTTACTGCGAAACATCTGCTATAATCTTAAATTATGAAATACGAAACAGCTAAAAATTTAAACAATACCAGATTCAAGCGTCTGATCGGCGTTGCCAAGCCTGTCTTTGACGAAATGGTCAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //