Array 1 464003-462142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071914.1 Ralstonia solanacearum strain SY1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 464002 29 100.0 32 ............................. GCGTATGTCGGCGAGGTCGCCAACTTCGGCGT 463941 29 100.0 32 ............................. CCATAAAGCCCTTATCGGATTTCTCGGCCGAT 463880 29 100.0 32 ............................. CTGGCTGGGAACGCGCTTGCGTTGTATCCGTT 463819 29 100.0 32 ............................. TCGCCGCAATACCGATGGCATCCATCGCCAGC 463758 29 100.0 32 ............................. CGGCTTCCAAGATACCCACGTCGAACCGCGCG 463697 29 100.0 32 ............................. TTGTCGGGCGGCGCTGGGCCGGTCGCGCAGGC 463636 29 96.6 32 ............................C GCAATGAGATCTTTCGGCGTTTCCGCCAGGAG 463575 29 100.0 32 ............................. CATGGGAACCGCACCTGAACTGATCGCCGCCA 463514 29 100.0 32 ............................. GCCAAGGCAGCTGCCGCGGCTGCGGCGAAGAA 463453 29 100.0 32 ............................. GGGAGTGCAACGGATACTTCAGGGGAGCGGGT 463392 29 100.0 32 ............................. ATTCCCCATCCCTTTTGCAGCTTATTTGCGCC 463331 29 100.0 32 ............................. AATGTTTAGTCCTTAGCAGGATTGGTCATCTA 463270 29 100.0 32 ............................. CCCTCGGGACTGCGGTACTTGGCCGGGGCTCC 463209 29 100.0 32 ............................. ATTTGCATCTGGACGGCATACAGATCAGCGCG 463148 29 100.0 32 ............................. AATTGCATTCTGTCGACAGCCGAGATTAACCC 463087 29 100.0 32 ............................. TCGTTGATTTGTATGGTTGCGCATTGTTGCAA 463026 29 100.0 33 ............................. TCGAACACGACGTTGTTGGTCACATATGCAGTG 462964 29 100.0 32 ............................. GTAGTTCACCATTCACGAACCTGCAACGTTCA 462903 29 100.0 32 ............................. GCGATCCTGATCGGTTACCGCGCGCCGGGAGA 462842 29 100.0 32 ............................. GCGGTCGCCTTGAGCGTGGTCAGCAGCCGCTC 462781 29 100.0 32 ............................. GCGGTCCAGAACATTACCCAGTTCGCGTCGGA 462720 29 100.0 32 ............................. ACGCGCCGTGCGTCAAGCAAACGGGTATCGAT 462659 29 100.0 32 ............................. CGCGCGAGGTGTGGGCGGCGGACTTCCGTGAC 462598 29 100.0 32 ............................. CCGGCATTTTCACATACGGACGGCCCAAGCTT 462537 29 100.0 32 ............................. GCAACGACGCTGGCGCCTGCCGCCAACCAGGC 462476 29 100.0 32 ............................. CAGCTGCATGTCGACACCGTGCGCGCGGCTGC 462415 29 100.0 32 ............................. GCAAGAAGGTTAAAACTGGAATTGTCATTCCG 462354 29 100.0 32 ............................. AAACCGGAGGAAGGCAAGGGCATGGACGCCAA 462293 29 100.0 32 ............................. CCGCGCGAGGTCTGGGCGGCCGAGTTCCGCGA 462232 29 89.7 32 ........T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 462171 29 86.2 0 ............C..........ACC... | T [462156] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGTACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : CCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCACCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 474011-473369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071914.1 Ralstonia solanacearum strain SY1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474010 29 100.0 32 ............................. ATGGACTATGCGCCGCGCATCGCTGCGGCGGC 473949 29 100.0 32 ............................. CCGCGGGCGGCGCAGGAAATACCGCCCCAACG 473888 29 100.0 32 ............................. GCGGCGCACGGTATGCGCCCCCACTAGCTCCA 473827 29 100.0 32 ............................. CGTGCATAGCTCGTGCGCAAGAAAACAACCGG 473766 29 100.0 32 ............................. GCGACCCGAAACGCAGCTACGTCCAGTGTATT 473705 29 100.0 32 ............................. CCCCAGTGCGCTTCGACACGTTCATGAGCGAC 473644 29 100.0 32 ............................. GCGTATCAGCCTTTCCCGCGCTTCTGCGTCCA 473583 29 100.0 32 ............................. ACCAACGACAACATGGCCGCGATCGAGGCCTG 473522 29 100.0 32 ............................. CTTCATGGGACTGTCAGACGCTGGAATCCCGA 473461 29 100.0 32 ............................. AACTCGATTGAGGCGTACGGCGCCTCAGGCAA 473400 29 86.2 0 ............CA..........T...A | TC,A [473372,473376] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTCGACTGCGTGAGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCAAGACTGCTACGATCCCCAGCTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //