Array 1 6752-7362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000001.1 Pelomicrobium methylotrophicum strain SM250 NODE_1_length_299094_cov_50.451799, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 6752 36 100.0 35 .................................... GGAACAACCTTCCAACCGGGCACAGGGATGCCGGC 6823 36 100.0 35 .................................... TCCCTGGCCTTGCCGCTGTGGTGTATGACCAGGAC 6894 36 100.0 37 .................................... TGGCCGGAGGCGTGCCGCGCCAGGGTGACGGGGCTGA 6967 36 100.0 37 .................................... GCCGCGCTCCTCTGTCACTTGCCCTTGCAACTCGCCG 7040 36 100.0 37 .................................... CGATCCTCTGCAGGCTGAGCCTGTCGAGATCGCAGAT 7113 36 100.0 35 .................................... ATGGGGCCTGTGGGTTCCGGGAAGTCTTCGGCGTG 7184 36 100.0 36 .................................... CCAGCAGCAGCATCGCGCGTGCGCGCGCGCACACGC 7256 36 100.0 35 .................................... GTCGGCATCATGTTCTGGTATAGCGTGAAGCTGAC 7327 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 100.0 36 ATCACAAAGCCTGCTCCGCGGCTTGGTAGTGGAGAC # Left flank : CCTCTATCGGACCTTTGCGGCGCGGATTGCGGCGTACGCCGGCGCCATCGCCATAGACGACACCGATTACAGACAGGCAGCATTGGTAGAGCGCACGGACGGCGAAGATCTAGAGCTTCACGAGCAAGCGCGCAGACAGCGTGTGATGGCGGCTCCTTACGAGCTGCGGCTCGCCATCGAGCAGGCTGCAGCGAAGCGCGGCGGCTACGTCGAGCGTCACAGAGGCAGCGTCAATCACTGCCGCGCCTGCAGGTCGAGGAACGTGAGCGGAGACATCGCGCGGCACTGCCACGCATGCGGCGCCGTCTTCGATGTGGACGAGAATGCTGCGCTCAACCTGCTCCATACCCTGATCGCCGGTCCGGCGCGAGCGGTGGAGTAATGGTTTGTTGCGGCACCAAAGAAATCAAACACTTGCAATTTGGTATGCGCGTGTTTTCTGCCAGCGCTCGCAAAGCCTATCAGAAGTATTTGTTATATTGCTTTTGTTTTTGTAAGCT # Right flank : CGATGCCCGTCTGGGTGGCCGGCGTCCAGGCATCGGCGAGCCAAAAACGCGCATCAAGCGTGCGCTTTTCGCCGCAGGTTTTGAGCACGGAATCGGTAGCATCGGGCCATGGTGCTCGATGCCATCTATTCGCATTTTTCTCGCCGTGCGCCGATCTATCTCTGGCTGCTGGCCGCCATGGCGGCTTTTGGGCACTATTTCACCGTTTCAATAAACGTCTCCGACTCGTTGCCGGGTACGGTCTTTCTTGTCCAGAAAGGCGCGAAACCAGGCAAAGGCGATCTGGCGGCTTTTCGGTACAACGGCGGTGGGCCTTATGAGCGGGGAAGCCTGTTCCTCAAGCGCGTCTTGGGTATACCGGGATCGGTGGTGACCGCTACGGATCGGGGTGATGGCTATCGCGACTACTTCGTCGACGGACTGTTTGCAGGCAGTGCCAAGCCATTGTCCAAGGACGGCATGCCCCTCGCCCCCGGCCCGGTCGGCGTCATACAGGAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCACAAAGCCTGCTCCGCGGCTTGGTAGTGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 7351-4622 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000034.1 Pelomicrobium methylotrophicum strain SM250 NODE_34_length_17705_cov_55.721242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7350 28 100.0 32 ............................ CGCAGTGACGCAGCGAGGGTGCTGCGCAGGTG 7290 28 100.0 32 ............................ AGACTCGCGAAGTTGGTTGCACACGGAGTACA 7230 28 100.0 32 ............................ GAGAGGGCGCTAGACACCCTAGGCCTCGTCAC 7170 28 100.0 32 ............................ TACGACCAGTGGAGAGATATACTGGCACCCTA 7110 28 100.0 32 ............................ CTTAGGATCCCCCCCTTTACCCCCATCCTCTC 7050 28 100.0 32 ............................ TTCCGCCCCCCCCTTCGCAGGGGGGGCAGAGG 6990 28 100.0 33 ............................ CCCCAGGCGAAGCTCAGGCTCCCCCCAGATAAG 6929 28 100.0 32 ............................ GACATGCTCATGGCATACGATCACTGGCGTGA 6869 28 100.0 32 ............................ CAGCACGCCCAGTGCGGCCCACGTCGATGGTT 6809 28 100.0 32 ............................ AGTCGATCTTTAGGAGTCCATGATCCATACTG 6749 28 100.0 32 ............................ GCATACACTGGGACAGGACTGGTACACCTCAG 6689 28 100.0 32 ............................ GGCTGCGTCGCTCCCCTCGCCAGCGCCATGCC 6629 28 100.0 32 ............................ TGCAATAGCCCCGCTCCCTGATCCCTGATACC 6569 28 100.0 32 ............................ CATAGGCTCCCTCCGTGGTGACCGCGTGTCCT 6509 28 100.0 32 ............................ AGCGTGCTAGCCCTATCGCAGCGCCACCCCTC 6449 28 100.0 32 ............................ CCCATGGGCAAGCGGGAGTGAATCGTCGGCAC 6389 28 100.0 32 ............................ TCGGTCGTACAGGTGACCGTCGCCGCATACAC 6329 28 100.0 32 ............................ GTAAACATGCGGCTTCTGGCGGAAACGCCGGA 6269 28 100.0 32 ............................ ATCGACGGCCGCATGATATACCCAGACCGCTT 6209 28 100.0 32 ............................ CTGCGCTCGCTCCACGACGCCGCCGGCGTCGG 6149 28 100.0 32 ............................ ACAAGGAATCTTGCTTCCCCAGGAGACAGATT 6089 28 100.0 32 ............................ AGTGGCTGCAGGCGGCCCTCGGCGTCGCCGCT 6029 28 100.0 32 ............................ AAGTGGCCGCGCGTCACCGAGTCGAAGAAATC 5969 28 100.0 32 ............................ GGTCTCCGCCGGCTTCGAGTCGGCGACGATCT 5909 28 100.0 32 ............................ AGACGTAGCTCGTGGTGTGGACTGCCCTCTAC 5849 28 100.0 32 ............................ GTCTACCCGAGCCGCGGGATCGAGATCACGCT 5789 28 100.0 32 ............................ GCTGTCTGATCCACCTGTTCGATACAGTGATA 5729 28 100.0 31 ............................ GAGCACCTACGCCGGGCTAGCTGTACTCGGG 5670 28 100.0 32 ............................ GTCTACCCGAGCCGCGGGATCGAGATCACGCT 5610 28 100.0 32 ............................ CTGTTGTCGCACGCAACCGAAGCCCCCAAGGC 5550 28 100.0 32 ............................ CTTTACCGCCGGCACGACCTCGTCCGCATCAG 5490 28 100.0 32 ............................ TTCCCGGGCGCCGCTCTCCTGATTGCTCTCGC 5430 28 100.0 32 ............................ CTGAGAAGAGAAGTGTTTCCGTCCAACATAAT 5370 28 100.0 32 ............................ TCATGGACGCGCTTGGCACTGCGGACTTAGTG 5310 28 100.0 32 ............................ CGGATGCGCCAGGCAACCCGACGCCAGGTGTC 5250 28 100.0 32 ............................ GCCACCATGAGTATCGCGGATCAGATCACAGC 5190 28 100.0 32 ............................ GCCGGTCCAGGTTTCGTGAAATCGCTTCTCGG 5130 28 100.0 33 ............................ GCCAGCTTGCCTTGCTGCTCCATGCGCCAAACA 5069 28 100.0 32 ............................ TAGAGCAGCTTGCACCACACACGCAGACATAG 5009 28 100.0 32 ............................ ACCCCCGCCCCCTCGGGGCATGACGGCGGGCA 4949 28 100.0 32 ............................ ATGCATGCCGATCCTGCTTTTACGGGAGGAAT 4889 28 100.0 32 ............................ TGCTTGGCTGGCAGGGCGTGCAAGATGAAACC 4829 28 100.0 32 ............................ TAGAGCGCGCAAAAGACTTCGTGCTCGTAGTG 4769 28 100.0 32 ............................ GCTCACATCGACGCGACGATCACCCAGGAAGC 4709 28 100.0 32 ............................ TGTAGCGCGGCGAGGTTTACCCGAGTCCACCC 4649 28 85.7 0 ........................TTGA | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.7 32 GTTTGCCGCCGCACAGGCGGCTTAGAAG # Left flank : TTATACGCAAAGGGGGTATATGCACATCTGGCGCGTCTTTACAGGCTGGAATTTGTTAGAGAGGAAGGGAAACGGTCAAAGCTTACGCCGTCAGACACCGTGAATTCGTATTTGGACCACGGGAACTACATTGCTTACGGCTATGCGTCCTGTGCATTGCACACGCTCGGGGTCTCGTTTGCATTCCCGGTACTGCATGGAAAAACGAGAAGAGGCGCCCTTGTTTTTGACGTGGCGGATTTAGTCAAGGACTGGCTCGTCATGCCGCTTGCGTTCGAGTACGGCGCGAAAATGAAGCCAGACAATCAGTTCAGGGCGGCGGTCATTGAAAGAGCTCAAGAAGAAAAGGTTTTAGACCTTCTCATGACCTTGATCAAAGCGGCGTGCGAAAAGTGTCAGTGAAAACAAAACGTTGTAAAAGCAAGTCAAAAACAAGGTTTGGCTGCGTAGTAAACGCGTAACACATTGATTGTTCTTTAACAATTAGAAACTCTGAAACA # Right flank : GAATTACATAATCTCGTGACATCAAAACAGCTCAGCCTGTTTCCAGAAGGCGGCGATGAGCGAAGTGCGTCGCTGAGCCGACTTGAGCTTGCCGCGTGCTGTGATGGCAAGGTCGGCAATGGAATCCGGGCAGTAGTTCGCCAGGGCGTGGCGCTTGAGCCAGGCCCACAGGTATTCGACCGGATTGAGCTCGGGCGCATAAGGCGGCAGGAAGGCCAGTTCGATTCTCCCCGCCAGGCTGTCGACGTAGTCCCGAACCAGACGGGAGCGATGTGCCTTCAGGCCATCCCAAATGATCAGCAAGCGTCGTCCGATCTGTTTGACCAGCGCCTTGAGGAAGGCGACGATCTGCGCACTCCTGATCGCGCCCTCGTGCAGGCGGAAATAGGCGTTCGTGAAGCTCACCCCGGCGATCATCGACCACTGCTTCCAGTTGAAATGGAACTGGATCACCGGGGTTTGCCCCTTGGACGCCCAGGTCCGCACCCGGGTGGGACGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCGCCGCACAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 25656-31850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000023.1 Pelomicrobium methylotrophicum strain SM250 NODE_23_length_50300_cov_53.107847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================ ================== 25656 36 100.0 36 .................................... GCGCCTTGCCATATGTTACAACCCGCGCTCTGCCGG 25728 36 100.0 36 .................................... TTCCACTGCCTTTATGCCGGTGGCGTGCTCGAGGAG 25800 36 100.0 39 .................................... ATCCCGGCGCTGGGCGATCTCATCGCCGTCTCCCACGAC 25875 36 100.0 38 .................................... GGATGGGCTGACACTCCCCGCGGACCACGAATGGTGGC 25949 36 100.0 36 .................................... GCCGGCATGGCGCTCTTCCCCGTGGTGCCCGTGGGC 26021 36 100.0 36 .................................... GATGGCGCGTTGTTGACGTTCAGGTAGAACAGGCCG 26093 36 100.0 37 .................................... TCCAAACCTCACCTTTCGCCACGCGCTCGACCACTTA 26166 36 100.0 37 .................................... CGGGCGCGATATGAGGCGCTCAGCCCTGTGCCGGCGA 26239 36 100.0 38 .................................... GAGGCGGGGCTCGTTACCTGGCGCGACATGTGGATGAC 26313 36 100.0 37 .................................... AGAAATTTCATTTAATATTCATTGATTTAAAAGACAT 26386 36 100.0 37 .................................... GCCGGCACCGTTAACCCGGCTTATTACCTCAAGGACG 26459 36 100.0 36 .................................... GATGCGGTCGAGCGCGTCCTGGAACCGCGCGAAACG 26531 36 100.0 35 .................................... GCAAACAATCAAGCAAATGTAAGTGAGAACTAACT 26602 36 100.0 39 .................................... CCGAAGGCTCGGGCTGACGACACCGGACGCGGAGATCAC 26677 36 100.0 38 .................................... GGCCCGTGCGGCGTGAAGCGGAAGACGTCCGCGCCGCC 26751 36 100.0 35 .................................... CTCGCCGCGCGCGGCGGAGTCGAGGCGTTCGACTG 26822 36 100.0 38 .................................... TCCTGACGATCTCCGCGCTGTCGATCGCCGGCATCGCA 26896 36 100.0 37 .................................... GACGCCGACCGAGAGTCTGCCGATGGCCGATAGCCAC 26969 36 100.0 35 .................................... ATGGAGACTCTGGCGGTCAGAAAGCCGCTCGATGG 27040 36 100.0 35 .................................... GAGACCTGCCGCCGCTTGAGCTTGAGCTTGTCGGC 27111 36 100.0 36 .................................... GCGGATGTCGGTCTTCGCTGCGGGCACGTATCTAAA 27183 36 100.0 36 .................................... ACTTTTCTCGCGAAGTCGACGGCACGGCTGATCCGG 27255 36 100.0 36 .................................... GTGATCCGCGGGCAGCGTGAGGCCGTCCCACGCGAG 27327 36 100.0 37 .................................... CCGTTGTCATAAAGCGCGACCGCATTGACCGTCCCGC 27400 36 100.0 37 .................................... CCATTTCCCTCCAAGCTCGCTAACTAGCGCGCGTGCC 27473 36 100.0 35 .................................... GGGTCTCTCATCATGATCTCGTAGAGCCTGTCGAG 27544 36 100.0 37 .................................... TTGGCGAGCTGCCGCAGTCCGACGCTGAGTTGTTCCG 27617 36 100.0 38 .................................... GCTGGGCTCTTCTCGCGGCACGTGGTGACGATCCACGA 27691 36 100.0 37 .................................... CGTGAAGCCATTCCTCAAATACGCTGGAGGCAAGCGC 27764 36 100.0 37 .................................... ACGTCCGTGTGGCCGGCGCGGAAGACGAGGGCGCAGG 27837 36 100.0 36 .................................... GCCTAGAAGCCCGGAGAGGTATCCGCGTAGCTGTTC 27909 36 100.0 38 .................................... ATTTTGGCCTGCTCGTCCGCGTCCTTGCCGCGGAGTCG 27983 36 100.0 36 .................................... AGTGTGTGATCAACAGCAGGAGGAATCATGCCAGAG 28055 36 100.0 36 .................................... CCAGCAGCATCCTGCTGGACCGCTACGTTCGAGGCC 28127 36 100.0 36 .................................... CGGGCCTGCGCCGCTCGTGACCGCGCGAGTCTCGAC 28199 36 100.0 36 .................................... GTCTGGATGATGGCGCTGACGACGTATGTGACCGTC 28271 36 100.0 36 .................................... GCTGCGCACGCGGGCGAAGGTTTTGCGGATGTCGGT 28343 36 100.0 37 .................................... GCTTCGTCCGATAGATGTTCTGGAGCCCGAGGCAGAG 28416 36 100.0 37 .................................... GCGCCCTCTTTTTTCATTTCTTTCGGGCTCGCATAAC 28489 36 100.0 37 .................................... CTGCGACCTCGGCATCCGCAGCAGCTTGCACAGGCTG 28562 36 100.0 39 .................................... GCTGAACATCACGGGGCCGCGGCGGCGCATGCGCTTGCG 28637 36 100.0 36 .................................... GCCTGCCTCGAGGAAGTGCTCCATCGGGTCATCATC 28709 36 100.0 36 .................................... GCCTATGTCTGCGCGCTGGATGAAGGCGATGATCCT 28781 36 100.0 35 .................................... TCGAGCGGGAATTCGTGACCAGGTATCGTTGCTAC 28852 36 100.0 36 .................................... AACCACACCGGCCAGTAGAGCGCGTGCGCCAGCCCG 28924 36 100.0 36 .................................... TATTGATCTTCCGGACAGCGAGACGAATGAAATGTT 28996 36 100.0 35 .................................... GTTTAATGTCAACTGCTATATGCAGCTAACCGCGA 29067 36 100.0 36 .................................... GCGTCGCGGGACGCAGGGATACGCTCGTGATGGGGT 29139 36 100.0 40 .................................... TCTGGCCGACCGCCCGCGCGTCCTCCACCGTCTGCGCGGC 29215 36 100.0 38 .................................... TGCCTGTTGTCAACGCAGTTTTAAGAGTGATCACCAAT 29289 36 100.0 36 .................................... ACTCGACCGGTTTGCACAAAGGGGGCCAGTTTTGGA 29361 36 100.0 35 .................................... CCGCGCGAAAGGCGTCTTGCACCTGGATCACCGCG 29432 36 100.0 36 .................................... TATTCCCCGCCCACCCGCGCCAGAGCGCGCGGCGCA 29504 36 100.0 39 .................................... GCCAGCGGCAATCCGCAGGCGGATCCCACGCAATACCTC 29579 36 100.0 39 .................................... AACCTGGATTTCCAGGCTACTGCCGCTGGGGCGCGGCAA 29654 36 100.0 37 .................................... TGGAAGAATTCTGGCGGTATGTTATGGAAGACATCGA 29727 36 100.0 36 .................................... TACTCATCCAGGGCGTGGCGTAGGTGCCGTGCTCAA 29799 36 100.0 36 .................................... TGGACAAAGTGGAGGATACCATCGCCGCGGATTATG 29871 36 100.0 35 .................................... GCCCATCTCCAGATCGGACGCATCGATCCCGAAGT 29942 36 100.0 38 .................................... GATTTTTTCGCATGTCTTCGGTTCACGGAAGGCGAACA 30016 36 100.0 37 .................................... GTGCCATATCCGGTCGCCAGACGAGTCCTCGGCTCGA 30089 36 100.0 38 .................................... GAAAGGTTTATACTCGCACGGAAGAAATCGCTCCCTGT 30163 36 100.0 36 .................................... ACCAGCCTCCGCACCTTTTTCGAAGGTCCGGGCGCG 30235 36 100.0 37 .................................... CCAAATTGCGCAAACTTCTCGTCAAGCCACTCCTTGA 30308 36 100.0 36 .................................... TTTTTAATCCGTGCTCATCGCACCACGCCTTTGCGG 30380 36 100.0 35 .................................... TCGATTTCGGGCCAGTTTGAGACACTTTCCGGCTT 30451 36 100.0 96 .................................... GCGAGGGTATTTTCTGCCGTCCGCGTGCAAGTCGCGCGTTATCCGCGGCCTCATTGAAGCCGCAGCTTGAGCCTGCCGCTCGTGGTGTCGGCCCAC 30583 36 100.0 36 .................................... AGGCGAATGCCGAAGACGATATCACCTGCCACGGTC 30655 36 100.0 36 .................................... TATTTTTGGCATCAACCAATCCAGAAGCGCATGCTT 30727 36 100.0 38 .................................... TGCCTATACATGTCCGCCGGGTCGTTCCAGGCCACCAG 30801 36 100.0 37 .................................... ATTCGAACGGCAAGCCGTTGATGCCGACGACGCCGTC 30874 36 100.0 38 .................................... ACTACGATCGAACACTGCGCTATAGTAGGCTCAGAGAT 30948 36 100.0 35 .................................... CTGCCGCGGACCCTGAGCGGCACTGCAGCGCTCGT 31019 36 100.0 36 .................................... CATGGCTGCGCGACCGGTATCTCGCTCGTTGGGGAT 31091 36 100.0 37 .................................... GCTTAACGCAAATTGTCTCGGCGCTGTCATGGCGCGC 31164 36 100.0 36 .................................... TCATAGGTGTCGCCGCCAGGCTTGTCTGCATCGTCG 31236 36 100.0 36 .................................... GAGTCCACCCGGACCCGGCTGTTGGGGGCGCTCCTA 31308 36 100.0 36 .................................... GATGCCGCAAGGATGGCGGCTGAAGCGACAAAATTC 31380 36 100.0 36 .................................... GATGCCGCAAGGATGGCGGCTGAAGCGACAAAATTC 31452 36 100.0 36 .................................... ACGACCGGCACCGGCACCGGCGAGCCTCGGGGCATC 31524 36 100.0 35 .................................... TAAGCTGTTCGCGGGCACGGCGATAGACTGCGTCC 31595 36 100.0 39 .................................... AGTCCATACGCAGAAGTTCAGACGCAAGACGATGTTCCG 31670 36 100.0 36 .................................... AAAGATTACCCAGTCCCAGTGATGCGATCGAGTTTG 31742 36 100.0 37 .................................... TATATAAAGATTGTCGTCTTGGATCAAATACTTTGAA 31815 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ================================================================================================ ================== 85 36 100.0 37 GTTATCCGCGGCAGAACGCCGCGGCCTCATTGAAGC # Left flank : GTGAACGAGGAACGCCTATACATTGTCGCTTACGACATCCGCCACCCGAAACGTTGGCGCAGGGTCTTTCGGATCATGCAGGGATACGGGGAATGGCTTCAGCTTTCCGTGTTCCAGTGTCGCCTGAGCCGCGAGCGACATGCAGAGTTGATTGCATTGTTGGACGGCATTATTCACCATGGGGAAGATCACGTGGTTCTGCTCGACCTCGGCCTTGCCGAGCGGGTCGTGCCCAGGGTCGTGAGTCTCGGCAAGACCTTTACACCCATTGAGCGCGAGCCGGTGATCGTGTGATTTTATTTGCCTTGCTTGCGCGAGCGCTCCAGTGGCGCGCCACGTCAGGATGAGCGCTCGCGAATGATAGCTCTTTAAAAATTCGAAGGAATTCTCGAATGGTCGAACGGAAGAACGAATTCCGCGGGCGCTTTTTAAAAGAATCCCCGGAAGCGCTCGCATCCCGCCTCGCCACGCCCGGCGGGATGCGGCCTCCCGAGGGGACT # Right flank : ACTTCGTCCAGCGCTTTCAGCCGGCGACTACCCAGGCCACCGGGAGTGTTCGCGTCATGCGGCGATGCTATTGCTGACGCACTCGGACCGCAGGGCAGGCACGACGGCGCTGTAAGCACCTTGTCGTCTGCGGAGGTATGTTAGGCAATCCGCGCGGGACCTCGCTCCACGGCGGACACCCATGATTTCAAGAACCACGCGCTGCCACTTCGAGTGCGCGCAGTTGGGCCGCTACCCGGTCGAGCACGCCATTCACGTACTTGTGACCCTCCGTGCCACCGAAGGTTTTGGCGAGCTCCACGGCTTCGTTGATCACCACCCGATAAGGGGTCTCGGGATGATGGGCGAGCTCGAAAGCGCCGAGCAACAGGATGCAGTGCTCGATAGGCGAGAGCTTTGACACCGCCCGGTCGAGGTAGGGCTGCAGGATCGCCTCCAGCTCTTTCGCTTCGCGCGCGACACCATGAACCAAAGCTTCGAACAGCGCGGCGTCAGCGTGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCGGCAGAACGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.50,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 59944-60334 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000016.1 Pelomicrobium methylotrophicum strain SM250 NODE_16_length_86452_cov_64.372650, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 59944 37 100.0 31 ..................................... AGGAGTGCAGGGGGCAACGGTCATCAGGTTC 60012 37 100.0 35 ..................................... CTGCGCCGTACTGATTGCCGCGTCAACGACGCCTT 60084 37 100.0 33 ..................................... GGCACATTGGGCAAACTCTAACGGGTACGATAA 60154 37 100.0 35 ..................................... GTACGCCGAGCGTGAGGCTCGGCCGATCGGCGATT 60226 37 100.0 35 ..................................... GTACGCCGAGCGTGAGGCTCGGCCGATCGGCGATT 60298 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 100.0 34 GTCTTAATCCCTTCTTCATCAGGTCATGGGTTCGAAC # Left flank : GGAATGCGAGGCGGAGATCGGGCAGGAGACGGGGGAGACTGCGTTGGCCATCGCGCTCGCCGACCGCTGGTCGATTCCCGTGTTCAACCTCGCCCGGGCGGACGCGCTGGAGCGGCTGGCGGCGTGGTTGGGCGTTCCGGCAGGATAATCAGTCTTACGATGTGACACTCCCAGCCACCTGAAGGGGTGGGAATCCCAGAGTCGATTTTTTTAAGATCTGATAAGGCAAAAATCAGGGGCTACACCTGCCCCTGCTCGTGGAAAAGGCCGAGGCTTTCAAGAGCATTCCGCCGGCACTGAAGGAGATTCGGCCTGGCTCAGTCCCAGCCGTCGCTGCAGCCGGCGGGCGTATGCGGCGGCATCGGCCCGGGCAGCCTCTTCGTCCGCCGCCATTTGCGCCTGGATGGCGGCTTCGTCGGTGGCGTCGACCCGGGCCGCATCGATGCGACCTGGCCAGTGCTCGCGGGGCGTGTCAGGACTCAGACGCATGCGTACGGTTT # Right flank : CTGCGGCGGCCAGAAAGCACCCAAAAAACAGCCCCTTGCAACGGGGGGTTGACAGAAGAATTCCTGACTGATCCGGTCAACTTTTTCCAGGCTTCTTTCAGGCCGCAACAGCGTGCAACAGATCAAAAAAATACCTCCTTCTGCATCCCAAAACAAGCACCTGTATGCGACCTGTCGGCATTGAATGCGAACACAGCCATGCGCGGACAGCAGGCGGAGGCTGCGGTATGATGTACGGGTCATCCGCCCCTGGCAGTAAGCCTTCCCTCGTTCATCCGGGAAGCGCCGAACCCTGGGGCTTTTCTTTTGCGCGCGCGGGGCGTGGCCGGAGATGAACCGCTGCGCCTACCTTTTTCTGGACGAAGCGGGCAACTTCGATTTCAGCCCGAAGGGCACGCGCTACTTCGTGCTCACCAGCGTGAGCACGCGGCGGCCGTTTGCGGTACACGCCGCGTTGGACGATTACCGGCACGATTGCCTGGAGTTCGGACTGGACAAGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTCTTCATCAGGTCATGGGTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.90,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 42097-41705 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000013.1 Pelomicrobium methylotrophicum strain SM250 NODE_13_length_100189_cov_48.426516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 42096 37 100.0 33 ..................................... GGATGCCATGCGACGAATTCGCCGCATGGCTCC 42026 37 100.0 34 ..................................... GGTTTTTTATCTCCCCCCTTGCCAGCTCAGATAT 41955 37 100.0 35 ..................................... GATCGCCCGGGCGGTGGTGATCGATGATCACCGCC 41883 37 100.0 36 ..................................... CCCTTCACGCGCCGACGCCTCCGGCAGTTCTGGGAT 41810 37 100.0 32 ..................................... TACTCGGTGGCAGAATATACCTTCTCGCGACG 41741 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 34 GTTCGAACCGATGACCTGATGAAGAAGGGATTAAGAC # Left flank : GTGACCTCCCCGGTCGAGCCGTCCGGGTTTCGATAGGTGCGCTTCGAGCCAGCCGGGTTTTCGATGGACACATCGAGCCCGGCGATGCGCACGTGGCCCTTCTTGTAATTCCCGGCCTCTTGCTGGGCCGGGGTGGGCTGCGGCAGATCGTTGCGGGGAGAGGTGGCCGCTCGATGGGCGAAGGAGTCTACCGTGCTTTCTTCTCTTCGTTCTTCTCCAGCGCTTGGGCGATCTCCTCTGGATAAGAGGGCTCCTCGTTCGGCTCGCTGGACGAGCTCTTCGATGAGTCGGTCAGATTCGGCCTGAACGGAATCAAGGCCCCTCTGCCGCCAAAGAACGGCTCGCCCGGCTTGGACTTCACCCACCTGACTTTCGCCACTTTCTTCCCCTATGACAAGGTAATCGGAACGGAACCGCTTGAACTCAAGCTCGAAAGCGGGCCATGCGTCCTGCAGACCACGAATGGTAGAAAAGATTTTAGCACGAAACAGCCCATCGGA # Right flank : GTTGCGCTACGTCTACGACTTTGGCAATGGCTGGGAGCACCGGATCAGAGCCGAGAAATCCCTCTCACTCCATGCATACCCTTGCGCTCCTTTTGCCTGGCCGGAGCGAATGCCCGTCCCCCCGGAAGATGTCGGCGATCCTGACGGCTACTTCGACTTCCTGCGGCCATTGCCGGCCCCGGCTATTCCGGACAGGAAGAGATATTCCAAGGGTGTGGCGGTGGCTTCGATCCTACTGCCCTCGATCTCGAGGGCACTGGCAAAACGCTTTCAGCGCATCAAGCCTTGATCGTCAAGGCGATGGCCGCTGGACGGTTACAAAAATCTGGGCACGCGGTTTCCGGTGCTGCCATCCTCTCGCGCGCGGCCATTTCAGGGGGTTGCCATCGCTTCATCGAGCACCTCAATCCAGTGCTTGACCGGCACCTCTGTGCCGCTGCGGAGATGGGTGAGACAGCCGATGTTGGCGGTGGCGATGAGTTCGGGTTTCCCCGAGGTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAACCGATGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 43510-45457 **** Predicted by CRISPRDetect 2.4 *** >NZ_VPFL01000013.1 Pelomicrobium methylotrophicum strain SM250 NODE_13_length_100189_cov_48.426516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 43510 37 100.0 35 ..................................... GTGGGACGATGAGCATCTTATCCGTCGGCCAACCC 43582 37 100.0 35 ..................................... CGCCACGCTCACCGCCATCAACGTGGCGCTCAAAG 43654 37 100.0 34 ..................................... GGCGGTTCAGGAAAACCCCGTGCCGAACGCCAAG 43725 37 100.0 37 ..................................... CCGCTCAGTGATACCTACCAGGCCCAAAGCGGTGATG 43799 37 100.0 35 ..................................... GAATGGAGATCGAGACCTGTCTGACCGACTCAAGG 43871 37 100.0 34 ..................................... CGGTCGAACGAAGACATTAATCGCTTGCTGGCTT 43942 37 100.0 35 ..................................... GCAACAAATTGTGGATAAGGTGCGCGAGAAGCTGG 44014 37 100.0 35 ..................................... CCCTAGGGCATGTTAGGGGCAACAGGAGAAGATAA 44086 37 100.0 35 ..................................... CACTTGCAGGAGGGGAATCCATGTGACCAGCGCCG 44158 37 100.0 32 ..................................... GCCGAGCGTGGTGGTTCGAGCCCACCCGGACC 44227 37 100.0 36 ..................................... CCAAAGGAGGGGCGCGAAAGACGCGGGCCGCCCCGC 44300 37 100.0 32 ..................................... ACTATTCGCTGAAGGATAAGGATATGGTCAAG 44369 37 100.0 34 ..................................... ACCCCACCGACGCCAAGGGGCTCCCGTGGCCGTC 44440 37 100.0 31 ..................................... ACAAGACCATAGAGCCCAAATGGAAGGGCAA 44508 37 100.0 34 ..................................... GTTCAACCCGGAGAAAAACGTGCGTCCGGCGCAC 44579 37 100.0 33 ..................................... CTTTCCAGCCCGGAAGCTCTGAAAGATCTCGAG 44649 37 100.0 34 ..................................... GAAATGGCTGGCCGAAGTGCGTCGGAGCGGAAGG 44720 37 100.0 34 ..................................... TCCTCCCGTGCGGGAGGGCGGCGCCCCCGAACCG 44791 37 100.0 33 ..................................... GGGTGTCATGAAGAAGATCCTCCTCCGGGCGCT 44861 37 100.0 35 ..................................... GCCCCCGGGCCATGGTTTAACCGCGTGGACGAAAC 44933 37 100.0 34 ..................................... CGCGCGCGCCCGCAAAATCCTGCGCCGCCGAGCC 45004 37 100.0 32 ..................................... TCTGGGAGGGGGAATACGCATCGGTCACCCAG 45073 37 100.0 32 ..................................... GGGCGAACCCCTGGATCTTTGCGGCCGACTAT 45142 37 100.0 32 ..................................... GAGACAGGTCGCGGGAAAATCCGCGACCTGAC 45211 37 100.0 13 ..................................... TGGAAGCAAAGGA Deletion [45261] 45261 28 67.6 0 ......................-..T.AA-------- - Deletion [45289] 45282 36 97.3 33 -.................................... TGTGGCCCGCGCTGACCGCGTTTGCCTGTCTGC 45352 37 100.0 32 ..................................... CAAAACGGCATAGCGGACAGGCTGAGCAAAAA 45421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 98.8 32 GTCTTAATCCCTTCTTCATCAGGTCATCGGTTCGAAC # Left flank : TGGCGAGCCGCGACCCACAAGCCTTCGAGCAACTGGCCGCCGAGTGGAGAAAGGAACACCCGGCGCAGGCGCTATTCTCCAGGCGAAGCCGCCCCGCCGACCTTCTAGCGGCAGATGGCCCGAAGATGGGGCGGGTCGGCAAACGCTACGTGAGCGAGGATGGCCGCTATGGGCTGGAGCCCGACGGCTTAGGCGGCTACTTCGTTACGGTCGAGGGGGAAGAAATCGGCTGGGGCTTCAACTTCCAGGACGCCCAGACGATCCTCAAGCGCCAGTATTGGGAAGACCTGAGAAGCGGCAAAGCGAAGCTTCCAGAAAGCGAGACCGTCTTCAATCGCTATTCCGAAAAGCAGGTGGAACAGCTCCTCGCCGGCTGGCGCCGGCTCACCGAGCACAAGGGAGCGTTCATGACGCCCAAGACCAGCTCCACCGAGCTACAACAGATTGTCCGCGACCTGCGCTTGGAGCGACTGGTGACCATCATCCCGATGGATGTATCC # Right flank : CTGCGGGCCGCCAAAAACCGCTTTGCATTGCAGGCTTACCGGTGCCGTTGACGAAAATTACCGGAAAAGACATGCTAACCCGCGCGCCCATGGGAGCGCTCAGTGAGCTGCAAAGATAATTTAGCCTCTGGCGGAGAAGATGTAAACGCAACGAACGATCCCGGTTCCTTGCCCTCGAGCAGTTGTATTCCATCGGGGAGCGCTTTTGTGCCAAGGACTACGAGCTCAGGTGAATCCGGTACCTGGTAGATACGCACGTCGTCGGTCTTGGGATCGATCAGGTCTGCGAGTGCCGACCGGATGGCGCCAATTTGGACTGCGCTTGCGCGGGTGACGAACACCGAGTACTGGACGGGTACTGCCTTGGACTTCAGGTAGCGATGCACGCGCGCAAGCCGCCTGGAATCGGCGACATCATAGGCAATCAGCCAGCTTTTGATAGCGTTCAGCGCCATTCTTCCAGCAGCGACTTGAGATACCGGTGCAAATGTCCGAGGATG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTCTTCATCAGGTCATCGGTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //