Array 1 89074-89238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAUK01000004.1 Streptococcus oralis subsp. dentisani 7747 strain CECT 7747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 89074 35 100.0 30 ................................... GAGACCGTAGTCCAAGGCAAGGTAGTTAAA 89139 35 100.0 30 ................................... CCTTAGGAGAAATCCAATCCTTGGTCAAGA 89204 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : TTAACCGTTACCGTGAGTTAATCAACTCTCTAGGACTTCGTCGTTAATCTTGCGTCTAAAACGTTTCTATACTTCGTTGCCTTCGCCTCGATGTACCATCAGTACAATCTTCGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATAAAGCTCTCTGATTTCAGAGGGCTTTTTATGTTGTCACCTTATCTCGATATACTCAAGTATAATCTTTGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTTGTTTTACTAACATTTTTGTACAATCTTCGCCTCGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATCATGATGCTAAGGGCGTTAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACATAAGGAGTTTTATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGGGCTTTTTTATTGAG # Right flank : CCTCAAATAGTATCAGCTAGTTACACCATAAAGGTGCGCATCTACTCGGCTTGAAAAGTCGAGTAGATGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTATAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGCTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 679702-677884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAUK01000004.1 Streptococcus oralis subsp. dentisani 7747 strain CECT 7747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 679701 36 100.0 30 .................................... AAAAACCGCTGCGGTTTGGACCCTAAAACT 679635 36 100.0 30 .................................... ATTATATGATGCGCAGGGACATAGATTGGG 679569 36 100.0 31 .................................... TAGGTATTTCTGGTTTCAAATACCTGATCTG 679502 36 100.0 31 .................................... TATGCTGATTCATCTTCATAATCTATAATAT 679435 36 100.0 30 .................................... TCCAAGCTATGCTCAATCGCTCCTGAAGAA 679369 36 100.0 30 .................................... TGTTTTTCATAGACAAGATGTTAGTGTTAT 679303 36 100.0 30 .................................... TATCCGCATACTCTATCACCCCGTAACGCT 679237 36 100.0 30 .................................... CACTTAGAGGATTGTCTTCACGTGGTATCG 679171 36 100.0 30 .................................... AAAGATTAGAAATAGCATCTTGGGTTTCTT 679105 36 100.0 30 .................................... GACCGCATCAGGACGATGAATGACCGGAAC 679039 36 100.0 30 .................................... CACTAAAATTTCCAGCAATCAAAGGCTCCT 678973 36 100.0 30 .................................... CATTTCCTGCAAACCATGTATTTTTACATG 678907 36 100.0 30 .................................... AGTGGAGCGTCGAGACCCTTTATTTTCCAA 678841 36 100.0 30 .................................... TCATCCACGTTGTGGATGTATCAACGTTAG 678775 36 100.0 30 .................................... CATTTTATCAGCTTCTTCTCTAATAATAGG 678709 36 100.0 30 .................................... TGATTGCTCCTGTTTCAGAGAGGGCTTCTA 678643 36 100.0 30 .................................... TGAAGAGAAGTCAACACGGATTACAAACAA 678577 36 100.0 30 .................................... CTTTCCCAAATTGCTGCTTATAAGCGAGAG 678511 36 100.0 30 .................................... CGGCTCTCTTGGAGCATGGTGGTATCAGTG 678445 36 100.0 30 .................................... TTCGGATGGGAGATGGCGCCTGCTAGTGAC 678379 36 100.0 30 .................................... GACCGCATCAGGACGATGAATGACCGGAAC 678313 36 100.0 30 .................................... CACTAAAATTTCCAGCAATCAAAGGCTCCT 678247 36 100.0 30 .................................... CAAAATATTCAATATTAGCATCGGTAGAGG 678181 36 100.0 30 .................................... CGCTTTCATTGAGTGAAATATTGTACAAAC 678115 36 100.0 29 .................................... CTATGAAGACCACGCAAGCGATGACGTGC 678050 36 100.0 29 .................................... ATATTGTAGAGCGTTTAGATATGCTTTCT 677985 36 100.0 30 .................................... CACCAGCAGTAAAACAGAAATTCTCAGAAG 677919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : TGCAATTCAATTTATTGATTCACTCTCATTGTGATATATTCATACAAAAACCGCTCTCCAGAGCGGTTTTCGTCTATTCTTGCCTTTTGCTACAATACCCACGTACGGATAGCATGGGCAACGCCAGATTCATCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACGGGGTTGCCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCCCCGATCGCCATGGTTTCATCTTTGCTCAATCCTAGTTTTTCAGCTAGATGGGTAATAGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGAATCTTTTCAATCGCAGCATCAAGAATCTCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGTCAGCCATTTCTTCAGGAGTGCGGTAGAAGATAGGCATGCTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //