Array 1 77207-76577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISQ01000004.1 Cronobacter sakazakii strain CS-24 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77206 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 77146 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 77086 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 77026 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 76965 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 76905 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 76845 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 76785 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 76725 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 76665 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 76605 28 85.7 0 ......................C.T.TC | T [76583] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 772571-770711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISQ01000001.1 Cronobacter sakazakii strain CS-24 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 772570 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 772509 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 772448 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 772387 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 772326 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 772265 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 772204 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 772143 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 772082 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 772021 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 771960 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 771899 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 771838 29 100.0 32 ............................. TTAAGAGTGCGCAACCTTTATAAAATAATTGC 771777 29 93.1 32 .A.............A............. ATCACTTTCGCTTTACACGTGGTGACGATCCG 771716 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 771655 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 771594 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 771533 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 771472 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 771411 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 771350 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 771289 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 771228 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 771167 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 771106 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 771045 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 770984 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 770923 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 770861 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 770800 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 770739 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 800220-798788 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISQ01000001.1 Cronobacter sakazakii strain CS-24 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 800219 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 800158 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 800097 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 800036 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 799975 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 799914 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 799853 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 799792 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 799731 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 799670 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 799609 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 799548 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 799487 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 799426 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 799365 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 799303 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 799242 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 799181 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 799120 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 799059 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 798998 29 100.0 32 ............................. TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 798937 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 798876 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 798815 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //