Array 1 153526-154272 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QYEV01000001.1 Listeria monocytogenes strain N13-0341 NODE_1_length_1401415_cov_61.8986, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
    153526	    29	 100.0	    37	.............................	AGCGTTTTTCTTTTTCGCTTCATTTGATAAATCTTCC 	
    153592	    29	 100.0	    36	.............................	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT  	
    153657	    29	  96.6	    38	................T............	ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT	
    153724	    29	  96.6	    37	................T............	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 	
    153790	    29	 100.0	    37	.............................	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA 	
    153856	    29	 100.0	    36	.............................	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA  	
    153921	    29	 100.0	    36	.............................	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT  	
    153986	    29	  96.6	    34	................T............	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC    	
    154049	    29	 100.0	    34	.............................	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG    	
    154112	    29	  96.6	    37	................A............	TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 	
    154178	    29	  75.9	    36	......T.C.A.C...CA...T.......	GAAGAAACAGCAAAATAACCAAAAGTAATGACTTTC  	G [154201]
    154244	    29	  79.3	     0	......A..T....AGA......A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
        12	    29	  95.1	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                      	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCTGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGGCAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGTGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAAATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT

# Questionable array : NO	 Score: 5.89
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTTTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-16] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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