Array 1 135289-135746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VELH01000002.1 Staphylococcus hominis strain DE0218 NODE_2_length_806750_cov_113.778055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 135289 36 100.0 35 .................................... TCACAGTCAATGCCATATGATTCAAGTGTCTCAAT 135360 36 100.0 35 .................................... AAAGATTGTTCTTTGTAAGTGTTACTTGTTTTTGT 135431 36 100.0 33 .................................... ACAACAGTATATAAAGGTGTAAAATCTTCTAAT 135500 36 100.0 36 .................................... AAAATTATTGGTCCTAACCATGAGACTAATCCACCA 135572 36 100.0 33 .................................... CACTTCCTCAGCACCTCTTTCACTCTTTCTTAA 135641 36 91.7 35 ..........T......A....T............. GGACTTAAATTTAAATGATTTATAATTTCATTCTT 135712 35 83.3 0 .................C....T.....G.-...GT | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 96.4 35 GATCGATAACCACCCCGGAGAACAGGGGACGAGAAC # Left flank : ATACTTTTCTTCAAAAGAATCTGATACATATTTTAAAAAGATTAAACCTAATGCTACATTTTTATACTCAGCAGCATCCATGCTTCCTCTCAATTTATCGGCAGCTTGCCATAATTTTTCTTCAAAACCTATAGTTGCCATTAATAACACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTGGTCACTAATTTTATCTCTTATTTCAAATTAAAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGAGTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGGAGAATGATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATTTATTAAAGTATCG # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAACACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTATATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 144469-145148 **** Predicted by CRISPRDetect 2.4 *** >NZ_VELH01000002.1 Staphylococcus hominis strain DE0218 NODE_2_length_806750_cov_113.778055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 144469 36 100.0 35 .................................... TCACCTTCTTTGTTTTTATATTCATTTTGAACACG 144540 36 100.0 36 .................................... ACGTGTTCTTGAGGCATGATACTACCAATTTCATCT 144612 36 100.0 38 .................................... AAGAATCTACAATAATCTGATATGATGTTTTTATCTTC 144686 36 94.4 35 ...................A..G............. TCGACACGTTCTTTAAGTGTTTCAAACGCTTTTTC 144757 36 100.0 35 .................................... TAAGCATGATGAACAACTTGTACTGATTTTACTTC 144828 36 88.9 36 ..........T.....AAC................. GGTAATAATAATATCTTTCCAACGTAAGTTACCTAT 144900 36 94.4 35 .................G..............A... TTGAATTTCTCATCTGTGTATTGTGATTGAAGTAA 144971 36 88.9 34 .A....C............A..G............. CCACCTTATGAAAAATACTTATTGAAGAATGCTC 145041 36 97.2 36 ............T....................... GGGTTTTCACGAGTGATTGTGTCGTGTTTTGTAGTA 145113 36 91.7 0 .............T............A......T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 95.5 36 ATTCGATAACCACCCCGTAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTATATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGTACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGCCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCACATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAACTATCT # Right flank : CCTCATCTTGATGATCTCAATTGGCTTGTTTCAAAAGAAATCGATAACCTCCGTAAAATAGAGAATAAGTATTAAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCAATTTCTAAATAAGCAGAAACAAAATGTCTTTCATACAAATAATTTCTTTATGATTAAGTTGGAATTAGAAAATCAATACGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGGGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAACCAAAAATAGGAATTAAATTTGAAATAAGATATAAAACAAATATTTTTGTCATAATTATTTTAGTAAGTGTTTTATTATTTAATAGGATAGGAACACAGCAAACATAAGCGGTTGAAAGTAAAGTAACGCCTAATAATGCTACAAATA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACCACCCCGTAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //