Array 1 786-3462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINCF010000002.1 Escherichia whittamii strain C2-3 c_000000000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 786 28 100.0 32 ............................ TCGCACGTGGCGATCCCTATCGGTGAGGAGTT 846 28 100.0 32 ............................ ACAGGGGCGCATGGCGCACAGCGACGCGAAAT 906 28 100.0 32 ............................ AGTCCACCAGCGCGCCGCCGTGTGTGCTGTAT 966 28 100.0 32 ............................ ACAGGGGCGCATGGCGCACAGCGACGCGAAAT 1026 28 100.0 32 ............................ AGAAAGTGCAGAAAAAAGAGGCCTCGCACGTG 1086 28 100.0 32 ............................ GGTGCCAGAGAACGGAATATACGGCACCCTGT 1146 28 100.0 32 ............................ ACTCAGCAGTAATATTCCCGTCAGACAACGTA 1206 28 100.0 32 ............................ ATTAATTGCGTGAATTGCTGTTCATTCATTTT 1266 28 100.0 32 ............................ CGCCGCGCCATGCTTGTTTGTATCTCTCTCCC 1326 28 100.0 32 ............................ TCCGATAACGAGAGGAAATCATCACCACCGGA 1386 28 100.0 32 ............................ GAAACTGGTGCCGAAGTACAGGCCAGTACGAT 1446 28 100.0 33 ............................ GCCGACAATAGCCAGGAACATGAGCGTGATCGT 1507 28 100.0 32 ............................ AGCCTGGGTGATGTTGTCGTCATTTAATGTGC 1567 28 100.0 32 ............................ CAATACGGGTAAGAAATTTTTCGTGCGCCACT 1627 28 100.0 32 ............................ TACCAGGACTACTCCCGCAGCGCCGCCAGCGT 1687 28 100.0 32 ............................ GACACGAACAGATCGCATTGTGAACACCTCCG 1747 28 100.0 32 ............................ AACCTGGTTTAATCCTGCTGACGAAAAACAGA 1807 28 100.0 32 ............................ GGAGTGCCTGCAATCATTCAGGCTGCTGCCGT 1867 28 100.0 32 ............................ CACAAATTCCCCAGGCCAGCTACTGACACTAA 1927 28 100.0 32 ............................ ACGCAGAGCGGCGACAACCTGACGTTCATTGC 1987 28 100.0 32 ............................ TGTAATGTGCGGGAAGAAGAGAGGCGCTCACG 2047 28 100.0 32 ............................ GGCATCGGCTATGGCGTGTTTGAACTGATCCA 2107 28 100.0 32 ............................ ACATTCCAGACATAACATTTTCGAGTCGCGCT 2167 28 100.0 32 ............................ AAAAATAACATATTCAAAGAAACCGTTTTGTT 2227 28 100.0 32 ............................ CAAGGGATCAAATCTTTTGAGAGCAATTAAGA 2287 28 100.0 32 ............................ ACTTGATGAAATTAGGCGCATGTACCTCCAGT 2347 28 100.0 32 ............................ GCTTTCTGCCAAATATTCGCAAATAGTCGTCA 2407 28 100.0 32 ............................ GCTTTCTGCCAAATATTCGCAAATAGTCGTCA 2467 28 100.0 32 ............................ ACTCGCCGTCGTCCTGCTCGCCAGCCTCTTCC 2527 28 100.0 32 ............................ ACTCGCCGTCGTCCTGCTCGCCAGCCTCTTCC 2587 28 100.0 32 ............................ AGATTGGAGAACAGATCCGCGTCAACTGTCGT 2647 28 100.0 34 ............................ TCAGCTTCAAAACATCGCGTCACCAACATTTCAA 2709 28 100.0 32 ............................ TTAGATGAGAGTGTGCGTGCCTTCGACTTTAC 2769 28 100.0 33 ............................ CTGATGGTTGGATAAGCTGTAGTGAGCAGATGC 2830 28 100.0 32 ............................ AGCGTGAGGCGGTTACCCTGTCGGCGCCCACG 2890 28 100.0 32 ............................ TGGTGGCGTATGCAGGGCTATGCGCTGGAAAT 2950 28 100.0 33 ............................ AAGAAACGCAGCAGCGTTGACGCCGCGATTAAT 3011 28 100.0 33 ............................ ATAATTTGTTTTTGCACCACTGTACCTCGTTAA 3072 28 100.0 33 ............................ AGCAGCGATGCGAAGCTCTTGAGGCGGATCAAT 3133 28 100.0 33 ............................ GCAACAAGGGGGGCGCATGACCGCAAACATTAT 3194 28 100.0 32 ............................ GAACGCAACAGCAGCACGACATTCAGCAGTGC 3254 28 100.0 33 ............................ ACGTATCCGTAACCAGTTTAACGTCGTGGGTAA 3315 28 100.0 32 ............................ GCAAACCAGATTTGGGATAAGGTTAACTCAGG 3375 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACTGCCT 3435 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCATCCCCGCCAGGCTGTGCAACATGTGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAGATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCAATGAACACACGATTCGTTCGACCGAGATTATGACCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTATGTAGAAAATATGAAATTGAAGAAGTACCGATCGACCCTTTTTTCAGGGTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTATGACTCGGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACGCTCCATCCTCCAGGATTTACTCCCCATAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCTATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCCAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10617-13174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINCF010000018.1 Escherichia whittamii strain C2-3 c_000000000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10617 28 100.0 32 ............................ GTTCATGACGTGGTGTGAAGAGCGCGGGATGA 10677 28 100.0 32 ............................ TCAATGAGCAACTTTGGGCTTGCTGTGGGCAC 10737 28 100.0 32 ............................ TTGATTCTGTCATCGCTGGCTGGTTTGTGCTG 10797 28 100.0 32 ............................ GAATTCCTGCAAAGCGATATTGACGATGTATG 10857 28 100.0 32 ............................ GAATTCCTGCAAAGCGATATTGACGATGTATG 10917 28 100.0 32 ............................ CGTGTCTTTGACATATGGGAAATAAAAAAGAA 10977 28 100.0 32 ............................ GAAGTCCACCAGTCTTTGAATGTGTGCATTTT 11037 28 100.0 32 ............................ AGGGGGATTTTGTCTATGCTGAAGTAAATGGT 11097 28 100.0 32 ............................ TGCCGCCAGGGCGCGCCCGTGTAGAACACCCT 11157 28 100.0 32 ............................ CGTCAGGCCGGACAATCTCTAATAATTCGCGT 11217 28 100.0 33 ............................ CTCAATGCGCCTCGCCAGCTCCGGTGCGCCCAT 11278 28 100.0 32 ............................ TCACTAATTGAAAAACTAATATTCACTCGTTC 11338 28 100.0 32 ............................ AATATACAGATTCGGGGTTATGCGGGGTTGAT 11398 28 100.0 32 ............................ CGAAATTTTTCGCACCGAAATCGCCGAATCTC 11458 28 100.0 32 ............................ ACACACGTAAATATTTACGTACAGGTGCGCCC 11518 28 100.0 32 ............................ TGTCGGCGCCCACGATAGCGGCGGCGGCTGTA 11578 28 100.0 33 ............................ CTGATGCCGGGAAAAAAATATATCAGCAGCGAA 11639 28 100.0 32 ............................ AAAAGAGGGGGATGTTGTTATCACGTGGATTG 11699 28 100.0 32 ............................ AACACTATCGGGGTTGGTTTTGTCCGCTTTAG 11759 28 100.0 32 ............................ GCATATTGTCAGCGCGATTTCTGCAACCGTTC 11819 28 100.0 33 ............................ AGAAGCATTGCGCCAGGCCGATTTATGCCTGGA 11880 28 100.0 32 ............................ CTGACAAAATTTGGCACCGATTTTCCGGCAGT 11940 28 100.0 32 ............................ GATTGCTATGTAGTCACCCAGGCGCAATACAA 12000 28 100.0 33 ............................ GCCCACTCATTACGCTGAACACGTGATTGAGTT 12061 28 100.0 33 ............................ GTCTTCCATGTTGCTGATTAGTTTTAGCGTGTT 12122 28 100.0 33 ............................ GGCACGCTGGAGGAATTTTTATTAATCGCCGAT 12183 28 100.0 32 ............................ AGCTGCGCGGCCCTGTTCTGTATCCACAACAA 12243 28 100.0 32 ............................ TGAGCGGCCATCACGTCAGTAATTGTCATTCG 12303 28 100.0 32 ............................ GGTTGACGCTGGACCAGTTCCGCGCGATTCAC 12363 28 100.0 33 ............................ CTGTTTGATGGCCACGCGAGTTATCATCTTAAC 12424 28 100.0 32 ............................ ATTCCCCATCCTTGATGTAGTCACTTGTGCCA 12484 28 100.0 32 ............................ CTGAATCATCAACGTCGCCCAGCGATTCGCGC 12544 28 100.0 32 ............................ AGAAATAGAAGACGAGAAAACACCGGGCGCGA 12604 28 100.0 32 ............................ AGCAGTTCGATCGCTGGCTCAGGCGTCTGAAT 12664 28 100.0 32 ............................ CCACCCGAGATACGATCCAGCAGACTCAAACC 12724 28 100.0 32 ............................ TTTCGCTTCCAGCTCCGCGCGATGGATATACC 12784 28 100.0 32 ............................ AGCAACAAAAAACCTGGTGACCGGATGACACA 12844 28 100.0 32 ............................ TTGCCAGTGATTCACGAGGCGAACTGTGTTAC 12904 28 100.0 33 ............................ ATTTGTCATGTGTAAAGGGGTGTACATACGTGT 12965 28 100.0 32 ............................ TTAGCCGCCAGAACGAACACACGACGCAGCGC 13025 28 100.0 32 ............................ AGGGCGACCAGTGCCACCAGAATTAATATTTT 13085 28 100.0 33 ............................ ACAGACAATCAATCGAATTAATTTCGAGGCCGG 13146 28 92.9 0 ........................C..T | C [13169] ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGTTTATTGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGTGCACGTCCAATGGCACGTGTGATTCAGGACAACCTGAAGAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGCTTGTTAGGTAGGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGCGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTATTGATAATTAATGCAGCTGGAAGGTAAGGATAAAAAAGGGTGGCACCAGGAAAATTAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCGTGTTATGACGCTCTCAACTTCAAACCATTAGCCCCAGCACACAATAACAATTGTGATAATTGCGATGAAAATCAATTTCTCGTACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAAATACCTTACCCCATCTGACCTCAAAACAATTCTCCACTCCAAACGAGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGAGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTAGGATTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTTGATGTTGATGTTGATGTCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //