Array 1 239906-244743 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJDB01000004.1 Legionella pneumophila strain 2531STDY5467368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 239906 28 100.0 32 ............................ AGTTAATCGTAACTCAATCTCTTTTTCAATAT 239966 28 100.0 32 ............................ TCTAAACGGGCATTAAGTCAGTCTCAGACAGT 240026 28 100.0 32 ............................ TAATCCAGGAGCAGGTGGGTCAGGAAGTTTAA 240086 28 100.0 32 ............................ AGATAGATAGTTGTTTAGAGCATTTTGTATGT 240146 28 100.0 32 ............................ AGTAACAATGATCCAGCAGGTGATGCGTCTGT 240206 28 100.0 32 ............................ ATTTTGTCGTGATTTGATGATAGACTAAGTCT 240266 28 100.0 32 ............................ TTAATACGGCTGCTGGTAGAGCTTTTAACCCT 240326 28 100.0 32 ............................ TCATTCGCTCGGCGTAGCGATTGAGTTTCGTA 240386 28 100.0 33 ............................ GCTATTCCCGCGTCACAAAGGGGACGGTGCAAT 240447 28 100.0 32 ............................ AAGAAGAACATAGCTAGTTTACTAGGGCTTAG 240507 28 100.0 32 ............................ AACACTCAGCACATAGGAAAAACGCTTGATAA 240567 28 100.0 32 ............................ ATCTGCATTCATCCCCTATGTATTCATCAGTA 240627 28 100.0 33 ............................ AGTTGGAACCGTCACAGATTAATATTGCTACGT 240688 28 100.0 32 ............................ ATTTAGAGCCAGCTGCGTAGCTGTATCACTCA 240748 28 100.0 32 ............................ ACAACCTGTTTTTCACTAAATCCATACTTATA 240808 28 100.0 32 ............................ ACTGATTTTATACGTGTTCATATTGATTTTTC 240868 28 100.0 32 ............................ AGACCCTAATCATGAATGGGAGATTGAAGCAG 240928 28 100.0 32 ............................ TGATAGAAACCTTGACTGGTCATGTATTGATG 240988 28 100.0 32 ............................ ATGCCCCGTCCACGATAGCGATAACCGTCACC 241048 28 100.0 32 ............................ TAGTTCTGCTTTTAATTGTCTGCGACGTTCAT 241108 28 100.0 32 ............................ CTGCTGCGGCTGCTCCATTATGAAAATAATTG 241168 28 100.0 32 ............................ TAGACACGATTGGGTAAAGGAAGCACCAGAAG 241228 28 100.0 32 ............................ TGTAAGTTCAGGTGGGGACACAGTTTTTATAC 241288 28 100.0 32 ............................ AATTCAGGCGACCATTGTGCAAACAGCTATGT 241348 28 100.0 32 ............................ TGTAGCTCCGGTTCCATTTGGGTTACCTATTC 241408 28 100.0 32 ............................ TGTTGTTAACAGCAAATCGCCTGTAGCTCCGG 241468 28 100.0 32 ............................ TGTGTACGGTCTACGACCTTCATTTAGTTTAT 241528 28 100.0 32 ............................ GTAATAAAGATTGAACTAGCAGCTACTCCACC 241588 28 100.0 32 ............................ TTATCTGCCGCGCTTCGCTTGCCTGCTACTTT 241648 28 100.0 32 ............................ AGTAACAAAGTATTACGCCAGTGAGATTGACC 241708 28 100.0 32 ............................ TAAACTATGGTACACAGTGTCCACATTCGTCA 241768 28 100.0 33 ............................ AAATAGATATATTCACAGATTTAAAAAAAGGTA 241829 28 100.0 32 ............................ TTTAAATGATGGTCATGAAAAAAGATTAAATG 241889 28 100.0 32 ............................ GTAGAGACAAGATACTTCAATCATTGCTTTAT 241949 28 100.0 36 ............................ TCCTAGTGCGTTAGGTTTATATAACATATTATAGTT 242013 28 100.0 32 ............................ GTTACCGCAGCACCTAAATTGAATTCTTGTTT 242073 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 242133 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 242193 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 242253 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 242313 28 100.0 32 ............................ ACCAATCAGGTCGCCAAGAACACCACTCACAA 242373 28 100.0 32 ............................ TGCGTCAAGTAATGCTGTTGATACTTTGCCTT 242433 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 242493 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 242553 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 242613 28 100.0 32 ............................ AATTCTCAGAAATAAATAAATGTTTATTTATA 242673 28 100.0 33 ............................ GGTAGACACTGGCCTTTTTAAATCCAATTGGGT 242734 28 100.0 32 ............................ ATTAAAAGCCTTGCTGCTGCATGTAGTCTATG 242794 28 100.0 32 ............................ AAGAAACCGGGGAAGTGAACGACGCATATCGC 242854 28 100.0 32 ............................ TGCTGAATTGCGCGTGAAATTCTTTCTGATAA 242914 28 100.0 32 ............................ AATCCTCAGCCCAATGATTTTCAGCATCAATT 242974 28 100.0 32 ............................ AATCACAAGTTTACGCCCACCTAAAGTTTTTA 243034 28 100.0 32 ............................ TATGACCTCCAATCTTCTTTCATGGTCATTAT 243094 28 100.0 32 ............................ TTATGATACGCAGGGCAATATATTGCGTAGAG 243154 28 100.0 32 ............................ TTGGGAAAATTCCCATATTGCTTTTGCACCAT 243214 28 100.0 32 ............................ AGCGTGACAAATTAATCAATAAGTACAATAAT 243274 28 100.0 32 ............................ TTGAAGAGTACATTGGATATTCAATTAGTGCT 243334 28 100.0 32 ............................ TACATGCAGATAGGCTAAAGGGGGGTATGCCC 243394 28 100.0 32 ............................ GCGGTATCCCCGCCTGCGCCATGCGTTTAACT 243454 28 100.0 32 ............................ ATTGATTCATTAAGAGCTAATTTAGAGCAACC 243514 28 100.0 32 ............................ TCCTCCTAAGCCTGGCGCGCCTAACAATTCTA 243574 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 243634 28 100.0 32 ............................ TCATAAGGCTCTACCTCATCAAGTTCGATATT 243694 28 100.0 32 ............................ AATATGGATAAGGCTTAAATGGTCTGGTGCCC 243754 28 100.0 32 ............................ TTAGGGGATTGTATCGCCCCTGGCGACGGATA 243814 28 100.0 32 ............................ ATCATACTTCTTTTATCAACTTTTTGTGTTGC 243874 28 100.0 33 ............................ ATTATGGATGCTGTTGCAAAAGGCGAGCTCACG 243935 28 100.0 32 ............................ GCCTAAAAGCCGAGGCGGACGTGAATTTTTAT 243995 28 100.0 32 ............................ AATTAATGTTAATCCTGTACCTCAGACTAGTT 244055 28 100.0 32 ............................ AATTATCCCAAACAAGACGATACGGAACAGCA 244115 28 100.0 32 ............................ GCTTGCGCCATGCGCTTAACTATTGCCCTCTC 244175 28 100.0 32 ............................ ATACGCACAGCTTAATGAGTGTTATTGGCGCG 244235 28 100.0 32 ............................ TACAATCTTGTTTAATGATGAATTAGTCAATG 244295 28 100.0 32 ............................ TACGCACAGCTTAATGAGTGTTATTGGCGCGA 244355 28 100.0 32 ............................ TTCCCGTCACGTTTTAAAAGCACGCAATCAAA 244415 28 100.0 32 ............................ TCTATCGTTGGCCTATGTCTTCCGTTAATCAT 244475 28 100.0 33 ............................ TTACAACATCGGCCGCCGCGACGGGAACAGTTC 244536 28 100.0 32 ............................ TATGAAAACGAACGACGTGAAACAGCGTAGGA 244596 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 244656 28 100.0 32 ............................ AATAGAGACAGCCAAAAAGAACTGAAATTTGA 244716 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 81 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AATACGGCGAAATAGACGAAAGTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAGAATGAATTCTGGAGGAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218006-216355 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJDB01000008.1 Legionella pneumophila strain 2531STDY5467368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 218005 28 100.0 32 ............................ GTCTTCGTGTGTAACCTCGTCTTTTTCGTCCT 217945 28 100.0 32 ............................ CTATGAAGACGGTCTGCACGGAGAACTCGTTA 217885 28 100.0 32 ............................ TGTAGCGGAATCAACGCCGTACGCCTCTGGTA 217825 28 100.0 32 ............................ GATCAATCAGATAATCCACAAGACTACATTCG 217765 28 100.0 32 ............................ TACGCCTCCGCTTGACGACTTTAAGCCCAAGG 217705 28 96.4 32 ....................T....... TTATGTGCAAAAGGGCGGTAAGGCATGGCAAT 217645 28 100.0 32 ............................ GCAACAAAAATGGCGCTAGAGGGCAACGAAAA 217585 28 100.0 32 ............................ TATCGTCAACAGAGTCAAAGTATCGCCAGCAG 217525 28 100.0 32 ............................ ACTTACCCCTCCAAGGGAGGTGGTGCGGACTC 217465 28 100.0 32 ............................ AGCGCGTAAAAATCCTATCGAGAGGTCAAAAG 217405 28 100.0 32 ............................ GATAACTGGCAAGACACCGCTTTTGCGTGGCG 217345 28 100.0 32 ............................ TTACTGAAAACGGCTGGAAAGCGTTTGATATT 217285 28 100.0 32 ............................ TTACTCCCAGCTCAATGAGTGCTACTGGAGGG 217225 28 100.0 32 ............................ GCTCTTCGATCGTCGGCCTATGTCTTCCGTTG 217165 28 100.0 32 ............................ TTTGCAGCTCGGACATCTAATCATTTCCGTCG 217105 28 100.0 32 ............................ TGTGCTAAAAGTTCCGTTTGCTGTTGCTTTGC 217045 28 100.0 32 ............................ GGCGACATAAAGCGAGACAAAGATGGCAACGA 216985 28 100.0 32 ............................ TACCAAGGTATTGCTGAAGCAATGGCCACTCA 216925 28 100.0 32 ............................ TTTTTCTCCGGCGGAATCTGGATCAAGCCATA 216865 28 100.0 32 ............................ GAACTTTCTGCTAGCAAGTCGAGCGATATAGA 216805 28 100.0 32 ............................ TCACGGTCTATTGTGTCGCCCTCAATTTGTCA 216745 28 100.0 32 ............................ TCTTCTTGCTCTTCAACAGCTTGCTTAGTCTC 216685 28 100.0 33 ............................ ACTGATTTAACAGCACAGATGGAAGCATTGAAA 216624 28 100.0 32 ............................ TCTCTGTAGTTTTGTTCAAAAACAGGGTATGT 216564 28 100.0 32 ............................ AATACATCACCAATTTGAATATCTCTAATCGT 216504 28 100.0 34 ............................ ATTTAGACGAATTTGTCGCGGCCGATTTAAGTAT 216442 28 100.0 32 ............................ AAGTAAATCCAGACCAGATATACATTCTTATC 216382 28 67.9 0 .............T......TGGGTTGG | ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGAGCAAAATAATATAACTGATTAATTTTTTTACCAGGAGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACACGAAAGTATAGACTTG # Right flank : TATTGGTTAAGTCGTATAAGAGGAGTTAAATCGGTATAATTATCCGAAGAACTGGGATGGAAACTCATTAAAGAACTAATCCCTGATATTAAATCTAAAACGGCACATTATGAGCATGCGCTATTAACCAAAGGGCATGCAAGACCCTGTAGGGTAGTTACAACTTATCGTCAGCCCAAAGGGAGAAAAGTAAAGACATCACGAGGAAAAATACCTCAACATTATCCAATGGAAGTTATAGTCAAGCGAATAAGGAGCCTTGGATTTTAGCTACTAATTTACCCTTGGATGTAGGGCCTGTTGATATTATCAATCTCTATTTTAAAAAAATGCAAATAGAAGAATCATTTAGAGACGTTAAAAGTCATCAATTCGGACTGGCGGGGCGGTATCTGCGTACTCATTCAGTTAATAGATGGGGCGTTAAAATGCTTCTTGCTGCTATTGTGGAAATTACTTATTGGGTTATTGGAGTGATTGCCCATAGTCAAAATAAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //