Array 1 247064-246546 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYE01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5365 NODE_3_length_378914_cov_58.730337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247063 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 247002 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 246941 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246880 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246819 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246758 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246697 29 96.6 31 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGC 246637 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC G [246636] 246575 29 93.1 0 ............TC............... | A [246548] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264931-263378 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYE01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5365 NODE_3_length_378914_cov_58.730337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264930 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264869 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264808 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264747 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264686 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264625 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264564 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264503 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264442 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264381 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 264320 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 264259 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 264198 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 264137 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 264076 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 264015 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 263954 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263893 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263832 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263771 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263710 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263649 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263588 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263527 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263466 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263405 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //