Array 1 169018-171496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017697.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 169018 36 100.0 30 .................................... CTGCGGAAGAGATTACCACGTATTACTAAC 169084 36 100.0 30 .................................... TTACATCAAAGAAGGTGAAAAAGCAGCACG 169150 36 100.0 30 .................................... TGCACCTTGAATTACGATTAACAATTTGTT 169216 36 100.0 30 .................................... TCTTTCCATGACTATTTACTTTTGAATAAG 169282 36 100.0 30 .................................... TATAGCCCCGACATTAGCCAATCAGGCATT 169348 36 100.0 30 .................................... ACTGCCGACCAAGTTATTTATCATATTCGA 169414 36 100.0 30 .................................... AACGCCATAATTGGGCGCCATTTCCTCAAT 169480 36 100.0 30 .................................... TCCCGTTTTATCCACGTGAAGGAGCTGAAA 169546 36 100.0 30 .................................... AATTGGCAGTCCTGCAATTTTACCAGCACA 169612 36 100.0 30 .................................... TGGTAAAGGTAAAGACAGTGTCTCACAAGG 169678 36 100.0 29 .................................... CTTTGCAACTCCGCCCTTGTTATTATAAA 169743 36 100.0 30 .................................... ACGTTGAGTCCGTTAAAGACAGCATCAACT 169809 36 100.0 30 .................................... GGAACTATCTAACTACTGTAAAACGTTTAG 169875 36 100.0 30 .................................... GCGTGTTTTGCAAACCTGACAGGGCTTGTT 169941 36 100.0 30 .................................... CAATCCGTCCTTTAATGAATTTACAAGAAA 170007 36 100.0 30 .................................... GTGGAGCTACGGTCACAGTGCTAGTGGGTA 170073 36 100.0 30 .................................... GTAAGCCAAGTGCAAACGTAAATTCAATAA 170139 36 100.0 30 .................................... GTCAAAGGCTGATGAGCTTACGAAAGCAAT 170205 36 100.0 30 .................................... TCAAAACGCCCAAGCCTATGATGCTTTACT 170271 36 100.0 30 .................................... TCGAGACATGTATACATCTGCATTGACTGG 170337 36 100.0 30 .................................... AAGAATCCTGTCATTCCAACGTTTATCGCG 170403 36 100.0 30 .................................... CAGCAACTTCAACACCATTCCCAACAAGTT 170469 36 100.0 30 .................................... CCAAAACTCGACAAACCGTAGTTCGCGATT 170535 36 100.0 30 .................................... TATTTGGCTTTAATCTGAATCTTGGCGATA 170601 36 100.0 30 .................................... TGCTTTGGTCGTTGCTGTTGCACTGGTAGC 170667 36 100.0 29 .................................... GAAAAGATAGAAGCACCCAAACTAATTCT 170732 36 100.0 30 .................................... TCCAGCAAGCCTTTTAACTCGTCTTGATTA 170798 36 100.0 30 .................................... TAAATCAGTTTCAAGTTCTAACTCAGATAT 170864 36 100.0 30 .................................... CCTCAGTTACCATAAGCGGATTGCCGTTAT 170930 36 100.0 30 .................................... CCTCAGTTACCATAAGCGGATTGCCGTTAT 170996 36 100.0 30 .................................... ACTGCGGTTCTGAGTAAATCTTCAACTGTG 171062 36 100.0 30 .................................... AGATGCGATGAACCTATTGTTTGCCGATAA 171128 36 100.0 30 .................................... ATAGCTCTACTGGCTTCATGGTTGGGTGAA 171194 36 100.0 30 .................................... CATGTGGTATCCATGACTTTTCAAGCATGA 171260 36 97.2 30 ......................C............. AGAAGTATCTTTGACCATTCGGCTGCTACT 171326 36 100.0 30 .................................... GTCCGGCACGTTTAGAGATACGGTCAAATG 171392 36 100.0 30 .................................... GCCATTGTTGATGGTGCTAAAGCTGCTGCA 171458 36 80.6 0 .....................T..A....A..ATTT | CT,T [171481,171484] ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.4 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : TTTAGCCTTTTGAATTGCGTCTTGATAGGTGGTTTCTAGCCCAGCTATTTTCACTTTAACCTGTCCCAGCATAGTAGTGTTTAATGTAGTAATCGGTTACATTTAGATACTTAGAAGCAATTTATACTCTGAGTACGTCATTACCAGCAATGGGGCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTGTTTGTGTACCTATGATTATAGTTGAGCAATTATCAAAGAAATTGGAAATGCGAAGTGTAGAATTAGTTATATAATCTCATTATTTATGTGAATAGCGATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGCAATTTAGTACCACTAACTGTGATTTCTGGGTGTTTTAGTCCGAACTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGCCCAGTATCCGTGTGATATCGGGCTATCGCGGTGTACTA # Right flank : TATCCAATAATCAACTTTTGCAACCGGCATCATTATGCTAAACTGAAGTAAATTAAAGAGATGGAGTTGATACTATGGGCTATCGAATAGGCTTAGATGTGGGGATTACGTCAACTGGTTATGCTGTTTTGAAGACTGATAAAAATGGACTACCATATAAAATTTTAACACTAGACTCAGTAATTTATCCGCGTGCTGAGAATCCACAAACAGGGGCGTCATTGGCGGAACCGCGGCGGATAAAACGAGGATTGCGGCGCCGTACGCGGCGAACCAAATTCCGTAAGCAACGAACGCAGCAATTATTTATACATAGTGGCTTATTGTCTAAACCTGAGATTGAACAAATCTTAGCAACACCACAAGCTAAATATTCAGTCTATGAACTTCGGGTAGCGGGTCTCGATCGTCGATTAACTAATAGTGAATTATTCCGCGTTTTGTACTTTTTTATCGGACACCGTGGATTTAAATCCAATCGTAAAGCCGAGTTAAATCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 176203-179276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017697.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 176203 36 100.0 30 .................................... ATTGTGATTCATCCAAAGTAATCACCTCCC 176269 36 100.0 30 .................................... GAACACAATGAGTTGTTATTAAATATTGGA 176335 36 100.0 30 .................................... AATACCAGGTAACACATCGTTTGCTGCTTT 176401 36 100.0 30 .................................... CGACTTTACAAATTGGTTTAAGGATATGGC 176467 36 100.0 30 .................................... CACCGACCCAGTTAATATCAAGTATCGCTT 176533 36 100.0 30 .................................... CCAAACAACTTATACTTCATCGCTTCACCA 176599 36 100.0 30 .................................... CTGCAATCTGTCTAGCCCTTAGCTTGGCAT 176665 36 100.0 30 .................................... CGGAGATAAAGAAACTCCCGCCAAGTTTTA 176731 36 100.0 30 .................................... CAGGCTGGACTAGTTGTTTTTGAGAATGGC 176797 36 100.0 30 .................................... TCCATGGCTGGTGCGCAGTTTAGCTCTGGC 176863 36 100.0 30 .................................... CAGTGGTATGCTAAACCTTCGAAAGTTAAA 176929 36 100.0 30 .................................... TTAGTGACACCAGCTAAATTGCGTTGCTCT 176995 36 100.0 30 .................................... CGCGATCACCTCCGTAAATTTAACTTTTAG 177061 36 100.0 30 .................................... AATGGCGTCACAATTGGGCTACCGCTGTTA 177127 36 100.0 30 .................................... CACGCATTTCAACTTCATTAGCTGTTCCAT 177193 36 100.0 30 .................................... GAGGTAGGCATCACACTAAAACATGATGAA 177259 36 100.0 30 .................................... CATGGGGATGGACTATAATCCGTTAAATGT 177325 36 100.0 30 .................................... CTGGCTACCCCGCCATTAATACAGCGGCTA 177391 36 100.0 30 .................................... GAAAAACGACACCAGTTCTATAGGGCTTTC 177457 36 100.0 30 .................................... CCCGATTAATGCAACAACTAAAAAATTAGA 177523 36 100.0 30 .................................... CTTGACCGATGAGAGTAGCGACTTGGTGGG 177589 36 100.0 30 .................................... GATAAACTTTTGGCGGTGCAGTTTCTTGTT 177655 36 100.0 30 .................................... AGCACAACGAGCGTTATCGATTGAACCAGC 177721 36 100.0 30 .................................... GGTTCTGGGATATAGTGATACAGACCAAGC 177787 36 100.0 30 .................................... AATGGTATCCAGCTCATAAGAATTCCATAT 177853 36 100.0 30 .................................... CCAGGCTCACGCTCCCTACGGTGACCGCTG 177919 36 100.0 30 .................................... CCGGATAAGTTGCGTTACCGCGTTGTGGTT 177985 36 100.0 30 .................................... TGATGAATACTCCTTTAGCAACTTTTCAAA 178051 36 100.0 30 .................................... TACCAGTAACGGTGCCCTCCACTGCAAAAA 178117 36 100.0 30 .................................... CATCATACGGAACAGCATAAGATAGGCATT 178183 36 100.0 30 .................................... GGCTCAAGCCGGTTATATCGTTTTTAGGAC 178249 36 97.2 30 ..................G................. GCTAGTGCCGCCGGTAGTCAAGCTAGTGCT 178315 36 100.0 30 .................................... ATATGACTTAAAACTTGATAACTTAGAGGT 178381 36 100.0 30 .................................... CAGTATCTTGCGAACCATCAATACCAGTTG 178447 36 100.0 30 .................................... ACTGTGGTTCTGAGCGCTCCTTAAGTTGTG 178513 36 100.0 30 .................................... CTGAATGAAAGACTTATCAGTCAATGCTTT 178579 36 100.0 30 .................................... GATTAATGTCATCATTAATACTATTCAAAG 178645 36 100.0 30 .................................... CTCATCTTGCCCAGTATCATCAAGTGCAAT 178711 36 100.0 30 .................................... ATTACGAGCCGACGCTATCAGCAAACAAGC 178777 36 100.0 30 .................................... TCTTGACATCATTTGTTGCATCTTCAATAA 178843 36 100.0 30 .................................... CCCAATGATTAACAGCGATACTGATTTTGT 178909 36 100.0 30 .................................... CACAAGCCTAGCAATACAGCCTGATGGTAT 178975 36 100.0 30 .................................... AGCTATGACTTCTATGAATTTTTTCTCTAA 179041 36 100.0 30 .................................... AAGGCGCTACCGTGGGAATACTCGGCTTTA 179107 36 100.0 30 .................................... AAAGATATTTTGCGGAATCTGCACGGAAAA 179173 36 100.0 32 .................................... CAATGGGTATAATCAAGGCATGGCAATACTAG 179241 36 72.2 0 .G...G......T.AG....A....A...T.G...T | ========== ====== ====== ====== ==================================== ================================ ================== 47 36 99.3 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GGGGAATTTCATTCTTTGAGCAATGCAGTTCATAAATTAGTATCGTCGTACACAACTTGTTGTCGTAATAATTCTGCCGCGGGTTTAAAGTTACCGGAACTGATCCCGCTGGTGGCGCACGAATATGAGTAGTAAGTATATGCGTTTATTAGTAATGTTCGACTTACCAGTAGTAAAGGCAAAAGAGCGTCGTGCAGCAGCAAAATTCCGGCAATACTTATTAGGTGATGGTTACGTGATGATGCAATATTCCGTTTATTATCGCATTGTTAATGGCTACGATATGGCTAAAAAGTATGAGCTGCGGCTCGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTATTAGTTGTAACAGAGAAACAATTCGATGAAATGCGTCTGTTAGTAGGTGATCCACTACCAAATGAAGAGAAACTAGATAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATCAGGTTCTTTTAGTATACTG # Right flank : TCACTCTTTATGGATAAGTTATATTGATAATCATAATTGCCTTTTGTAATATCCCTTAGATTCTTAAGATATTTTTTATTCATTATTTTTGAATAGAACAAATACTTATTCCCGAATTATTCATACGAGGTTTAATATCGGCATACCGCACAATTTTGGACCAATTCTCGTGCTGCTATGGCGTAGTCAAACCAAGATGTACTGTTTTTGCTAAAGGCTACCAAATTATGGGGCTGGATAAATTTTTGATCCTCAATTTTGAGCATACTTGCCCCTTGGCCGAACCGACTTTTTTTGATTTATTGCACCAGTTTAGCCCCACTGTAGCGCTTGGATTCGAGCTAACAGTTGATAAAACAAATCCTGATAGACGTGGTGGCGGCTTAATTTTAGATAAAGTTGCCGGCCGCTGGTCACCAGCTTACCCGCTACTTTAAACAGCCATAAGCGCAAGGTTGTAACCTGTAATCGCTGATGTTGTACAGGCAACAATTGGCGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //