Array 1 23090-21961 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIE01000030.1 Actinotignum sanguinis strain DSM 26039 Scaffold30_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23089 29 93.1 32 ..C...........G.............. TGGCGGGCATTCGTGGAGCCTTTTGAAAATTT 23028 29 96.6 32 ..C.......................... GGGTGCTAGCGGGCGCCCTACCGGCATCCTCT 22967 29 100.0 32 ............................. TGTGAAGATTGATGCGCAAACCCCTACCGCGG 22906 29 93.1 32 .....................A......T GGCTGGCAGCACCGCGGCTATTCCGAAGGCGC 22845 29 96.6 32 ............................T ATGACCGCTTTCCGCACCGCCGTATATAACGA 22784 29 100.0 33 ............................. CTTCCAACAAAAATACGGTATCGACCTGGAGGA 22722 29 100.0 32 ............................. ATGAAAGCTAACGGCGTAGACCTAGGCAAGTT 22661 29 100.0 33 ............................. CTTCCAACAAAAATACGGTATCGACCTGGAGGA 22599 29 100.0 32 ............................. ACCCTATTTAACCCTTGGCGTATGGCCGTGCC 22538 29 100.0 32 ............................. AACCCCGGGATCATATCCAGCACGAGCTCCGG 22477 29 100.0 32 ............................. AGTGCGCTCCCCATAGCTTGCGGCTTGCTGGA 22416 29 96.6 32 ..C.......................... AGTGCGCTCCCCATAGCTTGCGGCTTGCTGGA 22355 29 96.6 32 ..C.......................... GTCACGGGTAAGGGTGAGGACGGTACCTCGGT 22294 29 96.6 32 ..C.......................... GATGACTGGACCGACGAGGCGGTGTGGTACAA 22233 29 96.6 32 ..C.......................... ATCCGGAATTTGACCGAGCAGTATTCGGTCTA 22172 29 96.6 32 ..C.......................... TATCCATGAGCGTGCCGCGATCATCCGAGAGC 22111 29 96.6 32 ..C.......................... GGCCGGCTGATCATGCGCGGATTCCTGCGCGG 22050 29 93.1 32 ..C...........G.............. ACGTAGGTGCCAGGCAGGTTCTTACCGCTCGC 21989 29 69.0 0 ..C........A..GC...A..C.C.CA. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 95.8 32 CTGTTCCCCGCGCAAGCGGGGGTAATTCC # Left flank : CCGGGTCCGACGATAGCCAAAGGAGTATTCTCCGGGCGCAGTTCGTTGATAGTTGTTTTCGGCTCCAGGGTTCCACACGAACCAGGCCCTGACGAACCTATCTATGTTGGTGTCGCGAGCACGCCCGTAGCAAACGTACTCACCAGTGGCTTTCTAAGCGATGCTGAGATCTAGGCGGAAAGCACACTTAGTTCAGCAGATTTCGCAGGTCGCTTAGCTTAGGCAGCGAGGGCGAAATCGGTGCTCTTGTTCTTGGCACCTATTGGTTTGCAGAGACGCGTTATCGAGATGACTCTACATCCTCGGCCCGCTTCCCTCCGACTAACTACCGCCGTCGAAACCGATCATCCCCGTATGCTGTTATCAAACAGTTCCACCCGCCCGGCACTCAATGCCACTAGCGCGGTGGATTCATTATTCTACAACGACGACGCCGTATCCGCTATTCCCGCTGCCAATGTACTTAGAATCCGGTACCTTTTCTGAGGTGAAGAGACTGA # Right flank : GATCACCACCCCAGAGCCCCTAGAACAACGCCACCTTCTCCGGCGGCGGGAAAATCGCGTCGAGCTCAGCTAAGTCCGCGCTGCTCGGTTCCCACACCAGGGAGGCCGCGTTCTGGCGGACTTGCTGCGGCGTCGTCGCACCGGCAATAACGGATGCCACGCACGGCCGCGAGGCCAACCACGACATCGCCACCTGCACCGGCGTCAACCCGCGCGCCTGCGCAAACGCAACAAAAGCTTCAATCTGGTCCCAGTCCGTGGATTCGAGCAACGTCGCCTTAGAGTGCGCAATCCGCGAACCCTCCGGCGCCTCACCCCGCCGATACTTGCCCGTCAACAACCCGTTCGCCAGCGGGAAGTACGGGAAGATCCCCAGGCCGAAACGCTGCGCCGCTGGCACCACCTCGAGTTCCGCGCGCCGGTCAATCAAGTTGTAATGCGACTCGGTTGCAACCGGCCCCACCAGCCCGCGCCCGGCCGCCAGATGCGAAGCATCAGCA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAAGCGGGGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCAGGCGGGGGTAATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1731-3955 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIE01000016.1 Actinotignum sanguinis strain DSM 26039 Scaffold16_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1731 29 100.0 32 ............................. CATAACCCGGCTGACGCCTCTGGCCAAACGAA 1792 29 100.0 32 ............................. CCGCGCGGGCGGCGTGGCTCAAGCGGCTACCC 1853 29 100.0 32 ............................. CTCATCCTCAATCTTTCTGAGTAATTTCTTTG 1914 29 100.0 32 ............................. CTCACGGGACGCCTTATCCACACCAGCCACAT 1975 29 96.6 32 A............................ AATACGCGAAGACCAAGGGGACGTGGATCCAG 2036 29 100.0 32 ............................. TTTCCCCCTTACCGATGTAATTACCGTTGATA 2097 29 100.0 32 ............................. TTGAGGATGCGTTGCTGGAGTTTTCGGCTATA 2158 29 100.0 32 ............................. TCCCGGATTTCCACACCCGCGGGAATTTCCCC 2219 29 100.0 32 ............................. GCTTGGAAGATGGTGAAGAGATGACGGCGGTT 2280 29 100.0 32 ............................. TTTTCGCCGCCACCTGTGGCGTGGTGTGGTAT 2341 29 100.0 32 ............................. TCTGCAACATCGCCGCCCGCGGTGGAATCCTC 2402 29 100.0 32 ............................. AGGAAAGGTGTGAGGTCGTCATAAGTAAGGGT 2463 29 100.0 32 ............................. GCTCCACCCAAAAAATGGGCACTGGCACCAAC 2524 29 100.0 32 ............................. ACGCCATGTTCCCGATAATCCAAAAACACAAG 2585 29 100.0 32 ............................. TGTCGGCGAGTGCGTCCCAGGTTTGCGCGGTC 2646 29 100.0 32 ............................. CGCAAGATCAATGGGTTGATGGCGAGCTGGTG 2707 29 100.0 32 ............................. AACATGTGTTCCACAATAAAGCCTTTCAATCA 2768 29 100.0 32 ............................. GTATCGATATTGAGGCGGCATGGGCAGATCGC 2829 29 100.0 32 ............................. CAATGATCGCTACCGCCCGGCGACCCTCAGTG 2890 29 100.0 32 ............................. TACGCACCGCTCTTCCCCGCGCAGGCGGGTAA 2951 29 100.0 32 ............................. TATAGCTAGGGTCAGCGGTGATAGTGATTCGG 3012 29 100.0 32 ............................. TCGTCCAGAGGTCGCTAAAGAATCCCTTTACC 3073 29 100.0 32 ............................. TTGAGTCTGTCACCGTCGTGGCGAATGGGCCG 3134 29 100.0 32 ............................. TCGACGACGTGACACCGCCAGGGCGAAAAATA 3195 29 100.0 32 ............................. ACCAGGCAATGCGTGATCAGGCCGGGCTCGAA 3256 29 100.0 32 ............................. TGGTAGACGCGCGGGCGACGAACAAGACGCCC 3317 29 100.0 32 ............................. TCGGCAGCACATCGATGAGGTCAGCGGCCACT 3378 29 100.0 32 ............................. ACGGTTTCGGCGAAAGTCTCAATTACTTGAGA 3439 29 100.0 32 ............................. GTATAGACGAGGATTCCACCACCGCGGGCGAT 3500 29 100.0 32 ............................. CCGATGCGATGCGATTCGGCACACTCGAATGA 3561 29 100.0 32 ............................. TTGCGTGAGGTAGCGGCCACCAAACACGGCGG 3622 29 100.0 32 ............................. TTAGCCGAGAGACCTACGGCCGTGGCGGCTTC 3683 29 100.0 32 ............................. GCAACCGGGCCACACTTCGCTAATTGCTTCGC 3744 29 100.0 32 ............................. TTAGTTTGCAAGCGTTCCATTACTTGAGCAAC 3805 29 96.6 32 ...........T................. AGCTATAGAAGAAATGAGCGTGATTGACTAAT 3866 29 100.0 32 ............................. ATCCCCCTCACTACCGCGGGCCGCGGCCGGTG 3927 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.8 32 GGAATTACCCCCGCTCGCGCGGGGAAGAG # Left flank : CTGCTAGAAAATGTAGATATTGGCGTATACAAGCAGGAGGACACAAATCGTAACAACGTTATTGCCTTCGGTAGCGCCCCAGCGGGAACTCTAGGCGAACTTAGAGATAACTTCTGTGCATATTCACCGATCCTCACGTTGCCCGCGAAAACCTGGAACTACGGTGACTCCTGGTTCGTCGACTACATCACACCGAGTAAAACTTCCATGAAAGTAATGCATGCAGACCGGACCGTCCGGTTGGTCATTTCGGCGAACGGTCTTCGATAACCCGGGATTCCGAATAGGTAGGGGCCGCCTATAATGGCGTAATACCGCGGCCGTCGATTTCCAACGTTCCTCCAAAATTGGATGTGCTCCTTGAAGGTGCTACGTGAATACTTGAGGATATGTATCTCCTCTCACCCGGAACGACAGCGTGCGCTGAGTACATAGCGCTAGCGGAATAGCACAGGCCGCATCGGGAAAAGCCCCACCACGGATGCAGCTATTACGGCCCA # Right flank : GCTGCCTGACCTGGTTGTTTATCGGTGGCGGACCCGGAAATCGCAATGGAACAGAGTTCCAGATTTGCGGCTCGCCGGGAGATACGCCGATTCGCCGAGCGTAACAACCACGTTAGTTCCCACCTCTTAAATTTAGCTTATTCCGGCATGCCTATCTTTATCGGATACAGGCTCGTGCCCCCGATTATCCCGTTTGGCTATAGTGACCGTGCGTTTGCGAACCCGGCTCCTCCGTTCGCGATGAATCGGCGCATTACTAACCGAATCAGGAGAGCTGAGCGAAGCACCCGGCAGATCGACGCCAACTTCTTCCGTAGCAACTGCATCCTCCGCACCCATCCCGATAAGCAGCATGCCGACCAGATCAAGGACTGGGCGACTGCCGGTTCCCGTGCTGCGTAGCGCGAAGCCTTGCTCACGGGCGGCGTCGTTATAAATAAGAGTGAGGCTGCCGGAACCTGCGGCGGATACGGCACGTTCCCACAAATTGTCCCGCACTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAATTACCCCCGCTCGCGCGGGGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 6123-7188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIE01000016.1 Actinotignum sanguinis strain DSM 26039 Scaffold16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6123 29 89.7 32 ............TAG.............. CTCGAAACCTTAATGAAAGAACTCGAACTAAC 6184 29 89.7 32 ............TAG.............. TCAGCGACGACGACGCGCCCGCGCGTATCGAT 6245 29 89.7 32 ............TAG.............. TTATCCCCGGTGATGATCTCATCGATCTTAGC 6306 29 89.7 32 ............TAG.............. TCTCCCCCTTGTTTTCCTCTCGCACCCGGAGA 6367 29 100.0 32 ............................. GGGGAAATTCCCGCGGGTGTGGAAATCCGGGA 6428 29 100.0 32 ............................. ACCCGGTAAGGCGCGTGAGGGTCTGCTATGGG 6489 29 100.0 32 ............................. ATGGGCCTCGGAAAAACCTCCATCACCCTCAC 6550 29 100.0 32 ............................. GGGCAGTTAGCGCGTACTAGGTCGCCTGCCAT 6611 29 100.0 32 ............................. GGGCATACGCCGCGCGGGACGTGCGAGAAGTG C [6620] 6673 29 100.0 32 ............................. GGCGAGCCACACCCGCAAGGCGTGGACGCCGT 6734 29 100.0 32 ............................. TGAAAATACTGAGGTGGTGGAGCTGCGCGCAG 6795 29 100.0 32 ............................. GATATCCTCCGAGCGCTGCACACTCAGCTCTC 6856 29 96.6 32 ............................T TAGCAAGCCACGCTACAAGCTCATCATGAGTA 6917 29 93.1 32 ..........T..A............... GAAGCTAAAGCAGCTGAGAAAGAAAGCGTACG 6978 29 93.1 32 .............A..............T ATGCCTATCGAGCGCCGCGGCCCTCACTCAAG 7039 29 93.1 32 ..........T..A............... ATACGCTAATCCACCGGCGGCTGTAGCCGGTG 7100 29 86.2 32 ............TAG.............T CGTAATGCCGGTTGGAACATGCTCGCCAGCTT 7161 28 79.3 0 .........A.A.A...-..A.C...... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 94.5 32 CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Left flank : GCCGTCGTTTAAAACGTGGTAACGGCATAGCAGCGACGGTGCGTTTTCAAGCGATTCCGCATTTGTAAACAGTGTTTTCGCGCCGCTAGTGACGGTAACCGGAACGGATGCGCGTAAGGCTCGGCGTATGCCCTCGCGGTCGCTGCCGCGTAGCTTCTTCAAATCTTCGGGGTTCCCCGTCCACGCACCGGGGATAATATCCGGATCGCCGCACACAATCAGGCGGGTGGTTTCCACCTCGATGAGCCTGGTTGAGCGCTCGTCCCCGAGGTTTTGATCGCGCTGGGTCATGGCCGCGAAGGACTGCACCTGGGAGGCCTCGCCCAGACAGTTTTTCATATTGTAAGCAGCGTTCCGGGCGCGGATTCCCGCTAAAGGTGGGAACTGACTTGATCGTCGCACCTAGCGCACCGGCGCATCTCATAGAGATCCGCAAATCTGGAACTCTGTTCCGTTGCCATTCTCGGGGGTTTCGCCAATAAACGACCAGGTCAGGCAGT # Right flank : CACCGCTAACCCGCACCAACTCGCCTAAGGAAAACGACGCGCAGTTTTGTTTATCGCGGGTTTGCAACTTGTATTGAGCTACCGCACCAGCCCTTCGCGGCGCCGGGCAGCAGACATCGCCCGCTGCGCCTCCCGGTCTGCTTCGCGCCGGCGGATCGTCTCGCGCTTATCCCATTCCTGCTTACCCTTGGCCACCGCGATTTCCAGCTTGGCGAGCCCACGCACGAAATACAGCTCGAGGGGCACAATCGTATACCCCTTCGCCTCGACCGCCCGCGCCAGCTTCTCAATCTCCGATTTGTGCAGCAGCAGGCGCCGCTTGCGGGTGGGCGCGTGATTCGTCCACGTCCCCATCGCGTAAATCGGGATATTGATCCCGTGCGCGTACACCTGCCCGCGGTCCACCTCAATCCAGCCATCCACCAGCGAGGCCCGCCCCATGCGCAGCGCCTTCACCTCGGTGCCGGATAGCGACATCCCCGCCTCAAAGGTGTCCTCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Alternate repeat : CTCTTCCCCGCGTAGGCGGGGGTAATTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //