Array 1 11433-11109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVU010000001.1 Thermoactinomyces vulgaris strain CICC 10650=ACCC 41061 NODE_1_length_745454_cov_3.704083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 11432 36 100.0 34 .................................... TTTTACGCATCGCCTTGGCGAACATCGCCTTTAA 11362 36 100.0 37 .................................... TACAACTTCTTTTTAAGTTTACGAACGTAACTTTCAC 11289 36 100.0 37 .................................... ATGTCATTGCTGATTCCTCCTTATGGAACATATGTTT 11216 36 94.4 36 ....................TC.............. GATAGCTTTTGCGATGGTATCTTTGTTGTAGGGAAG 11144 36 86.1 0 ....A....G..........TC.G............ | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.1 36 GTCAGAATGATTACACCTCTCTTAGAGGATTGAAAC # Left flank : ATCAATCCAAAGATCGGCGGCACTTTGATGCTGATTTCAGGGATCGGCGGAATAATTAGCATCTCGATGTTCTATGTATTAGCAACCGTGTTCCTTGTAATTGCAGGATTAATGGGAATCTTCCGCAAGGATAAACAAAAAGAAATGTCAGCATGAACCTAAAGGTGGGATTTTCCTCTTCTGGAGGATTACAAAAACAGCCCTCTCCATTTCCCGGAGAGGGCTGTAATATTAGAACTGAAGGTTTACAAGAATTTTATTTTTTTGTAGACTGATATTAGTTGATATTTTTGATGTTCATACAAGGATTTATCGAGCGCCTTGATATGTCAAAAATCCCCGGGGTTGCTCGCAATAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACTTCGTTTTGAGCTGATACATAAAAAATAACTTAAATGCTCTTTTAAAAACGAAGGTGCTCGAAAAACGGTGCTGAACCTCAAGCGTGCCAAGGGTTTCAGACACATGCC # Right flank : AAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGTCCTGGCATGTGGAGATAGTGGAACGGATCGGCCAAGAATTTATCAAATTGACGGCTGACTGAATGATATCCAATCGCATATGCACCGAACCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATGGTGTTATCCGTCGGAGTATCTTTCCAACCGCCGCCAGGAATCGCTGCGCCACGGGATTCATAGTCATCCCTTGTGGCCATACTGATGATAAAGCGGACATAATATTGAATTGCCCCTTCATCATAGAGATCCTGCAAAGCTTGTCCACATGCTGCATGGTCCGGATGGATATCGTGATAACTCAAGGTATAGTGGTCAGCATCAGGGAACAGGTTGATATATTTTTGGATTACACTTTTGGCTTCATTCACTGTCACATTTTCCCCGCCGTCGCTGTTCGGATCATCAAGATATTCAATATGCTGATTTTCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTACACCTCTCTTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1120-1578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVU010000006.1 Thermoactinomyces vulgaris strain CICC 10650=ACCC 41061 NODE_6_length_182256_cov_3.446187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================================================================================= ================== 1120 36 100.0 36 .................................... GATGTTGTTCGATTTCACTTCATCCGATTTGTTACT 1192 36 100.0 40 .................................... CATCTTCGTCGTATAAAATTTGAGAAACTTGTTCTTCATG 1268 36 97.2 36 ........................A........... TCATGATGTTACGTCTTCATTTGATCTGGAAGTTGG 1340 36 86.1 167 ....A.G...C........T..T............. TTTTTCTCGGTCAACTCCACATTGACCTTTGCCCAATCGTCAAAAAGGAAAAAGCCACTTCGTTTTGAGCTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACCATATTGAACCTCAAGCGTGTCAAGGGTTTGAGACATATGCC 1543 36 91.7 0 ........A...G..T.................... | ========== ====== ====== ====== ==================================== ======================================================================================================================================================================= ================== 5 36 95.0 70 GTCAGAATGATTACACCTCATCAAGAGGATTGAAAC # Left flank : CGAAAAACCTCTTGAAATCAGAGGTTAGACGGGTTATTATTTTCAACAAAGAACTTGATTGCATCTCATTTTGAGAATTGAAACACCACCTATCACGCAAATGCTGTCAACCGTTGCTGTGGTCACAATGATTACACCTCTTCTAGAGGATTACAAAAACAGCTCTCTCCATCACCGGAGAGATGTTTTAATAGAGATTATCTCTTGCCTTTAAAATGTTAGACTTTGAAGGTTTACAGTCTTTTTATCTTTTTGCTAAACTGAAAATAATTGATATTCCTGATGTTCAAACTTGTAACAGAAGTTATTTTTCGAGCACCTTGATATCTCAAAAATCCCCGGGGTTGCTCGCAAAAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACCTTCGTTTTGACTTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACGGTGCTGAACCTCAAGAGTGCCAAGGGTTTCAGACACATGCC # Right flank : CGATGTTGGCTTGGCTTTCAATTGATGCCAAGGTTCCGTCAGAATGATGGAACGGATTGGCTAGATTTAATAAGTAACAAAAAATCTTACGTTACTTTTCAAAAGAGGAAAGTCCAGATAACCACCGAATCCTCTTGAAATTCAAATGTCGAGTGGTTATGAAAAATACCCGGGAACTTTAATATTGGATCAGCATGTATTTTTGCATGCATAAAAAAGACCGTCCATATCGGACGGTCTTTTTTTATTCCAAACTGGATTCAATGAACCGGATTTGTATCTCGTCTAACTTTTTCATATGATAACCTCCTATTTCATTAGTCAATCTCCTGGCACGCCACTTACACAGTGAACGAAAATACCACTGTGTCACGTTCGTGCAGGTGACGGCCACCTCTTCGCTGGTGAAACTTTGACTTATATATTTTTTGACTTGAAGATTCTCACAGCAAAAAAGTTGAATGAATGAAGAATTTTTATTTTAACCCTTTTCTCTCCGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTACACCTCATCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //