Array 1 16534-16824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003334.1 Clostridium botulinum D str. 16868 plasmid p1Cb16868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 16534 29 100.0 37 ............................. ATGTTGACTACTGCTAAAAGAGTTAATAATAAATTAG 16600 29 100.0 35 ............................. CCTTTTCATCCTAATTGCAGAAGTACAACAGTAGC 16664 29 100.0 36 ............................. CGTCAAAAAATGTGGATGGTTATGCACTATTATAGC 16729 29 100.0 39 ............................. AATGTATTAGATAATTTTCCTTCACCTTTTTCAAATTCG 16797 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 99.3 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : AGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACCTCAGGTAATGTTTTTGGTAATTTTTTTAAATTTTATTGTAACCTAGTTGTATCAACGATTAGAGCAATTTATTGCAAAGAATCGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAGG # Right flank : TTTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 19076-20789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003334.1 Clostridium botulinum D str. 16868 plasmid p1Cb16868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19076 29 100.0 36 ............................. TGTTATGTTAGTTTTTGCTGGATGAACTAATAAACC 19141 29 100.0 36 ............................. TTAGATTTATTGTTAACAATATAATCTCTTATTTGT 19206 29 100.0 38 ............................. TTAGATATGTTGCATCGGCAAATAATTGTAAGTTCATT 19273 29 100.0 37 ............................. TAATGAGCAATTTTTCTATTTGTTCTAAATGTTTATC 19339 29 100.0 37 ............................. ATGCCACAACGTAGAGTACAGTATGAAACTATACCTG 19405 29 100.0 35 ............................. AATAGAAAGCTATTTATTATAACTGGAAGTATATC 19469 29 100.0 37 ............................. ATAATTACACCTTTAACACCATTCAACTTTGACATAT 19535 29 100.0 36 ............................. GATGGAATCATAAAAAGCATACTTTTTCAGATATAA 19600 29 100.0 37 ............................. TAAGAAATTACAACACCATTGTCCTGTCCTACACTAT 19666 29 100.0 36 ............................. TTATATGAAGAATATTTTGCCTTCCTGTTTGTTTGC 19731 29 100.0 37 ............................. TTAAAGCTCTTTTAAATTTAGAAAATGTTAAGTTAGA 19797 29 100.0 36 ............................. TATTATGATGTTAGATAGAAATGATTGCGCGTTTAT 19862 29 100.0 36 ............................. ACTTTTAGTTATTATATTCAACAACTTATCTGTAAG 19927 29 100.0 36 ............................. ATGTTTTTTAATGCTATAAGATAGGAAGTGATATAT 19992 29 100.0 35 ............................. CCATATTGGGAAACTGCTGGCTATGGAAATAAATT 20056 29 100.0 36 ............................. TTAACAAAGCAATTAAACAACTACTAACAATAAATA 20121 29 100.0 37 ............................. TCAGCGATTTGCTTACTTATTGTACTTGTCATATCAA 20187 29 100.0 38 ............................. CTAAGCTATTTGCAATTTCATTTAATATTTTTTCTTCT 20254 29 100.0 38 ............................. CTTAAAAATGGGACTTGTAAATTGACTATTAAATATGA 20321 29 100.0 38 ............................. GAATTGGAAGGAACAGAAAAGCAAATAGCTTGGGCTAA 20388 29 100.0 36 ............................. TATGATGCTACAAAAGTAGATGATGGAGAGGACATA 20453 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 20518 29 100.0 36 ............................. GATGAATTTTTGGATTTAAGAGTAGCAGAAGAAGGA 20583 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 20648 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 20713 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [20762] 20762 28 82.8 0 ........TT......T....-......A | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 99.2 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : ATCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 53278-54514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENR01000121.1 Clostridium botulinum D str. 16868 p2Cb16868_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 53278 28 79.3 194 A......A.........-..AC.....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG T,A [53280,53288] 53502 29 100.0 37 ............................. CAAATGTAATCATCTCTTTACAAGACGTGTCAAAACT 53568 29 100.0 36 ............................. TTTATGGTGAACTAAGTTTAAAAAAAAGACAAGAAA 53633 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 53700 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 53766 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 53835 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 53900 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 53965 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 54030 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 54095 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 54160 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 54225 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 54290 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 54355 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 54420 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 54486 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 17 29 98.8 46 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : GTTGTATAAAACTTGGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTGTATGGAAAATTGGTTAGTTTGGAATAATATACTTATAAGAATTTAGGAGGAATCTAAATGAGAAATTTTGAAGTACCTGATTTTGATTACAAAGAAGAAGTTAAGAAATGCAAAAGTTTAGATGATGTTATGGGTAAAAACGGATTAATACAAAGAATGTTAAAAGACGTTATTCAAAATATATTGGAAGCAGAAATGGAAGATCATTTGGGAAGAGATAAATATGAAAGAAATTCTGAAAATAATAGTAAAAATTATCGCAATGGCTATAGTAAAAAGAATATACGCAGTAGCTTTGGAGATATAGATGTAGATATTCCAAGGGATAGAAATGCTGAATTCGAACCAAAAGTAATTAAAAAGTATGAAACTGTTTGCAATGAACTAGACAAAAAGGTTATTGGTCTTTATGCACGGGGTATGTCTACACGTGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 56025-56386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENR01000121.1 Clostridium botulinum D str. 16868 p2Cb16868_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 56025 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 56093 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 56160 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 56227 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 56292 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 56358 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : CCTAGAACTTGATAATCTCAAGGAAAAATGGGGTTCTAAGTACGGTATAGTTATTGATTCTTGGTATAATAATTGGGATAATTTATCCACATTCTTCGAATTTTCACCTGAGATTAGAAAATTTACTAAAACCAGAACCGTATTTCCTACGGATGAATCCTTAAAAAAGTCATTATATCTAGCAACCATGGAGATAATGGAAAAATGGACTTCACCAAGACAAAATTGGGCTCTTACACTAGGTCAATTAACAATTACATTTGGTAATAAAATAGATGAATTTTTAGCATAATAGCTTGTACTTTTTAGAAATTTTATGTATATTTAAAACTTTATTACACACACTATAATTAGATATAATTAGCCATTATTAGTATGTTTTAAATTTAAAAAAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCC # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 59338-61476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENR01000121.1 Clostridium botulinum D str. 16868 p2Cb16868_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 59338 29 100.0 36 ............................. AATATGATTTGTTATCAAGAGAAATATAAGTAGGAG 59403 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 59470 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 59535 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 59602 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 59667 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 59731 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 59797 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 59862 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 59929 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 59994 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 60059 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 60128 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 60194 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 60259 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 60328 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 60394 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 60459 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 60524 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 60590 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 60656 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 60722 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 60788 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 60854 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 60919 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 60986 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 61052 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 61119 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 61185 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 61250 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 61316 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 61383 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 61448 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 33 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 62588-63143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENR01000121.1 Clostridium botulinum D str. 16868 p2Cb16868_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 62588 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 62653 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 62719 30 100.0 36 .............................. CAACAAAAAAAATGCACTAAAAAATGCACTACTGAA 62785 30 100.0 36 .............................. ATGAATTATAGAGTTTAGTATAATCACTATCAGATG 62851 30 100.0 37 .............................. AAGATAGTACTTTTATAAACTGCTTTAGATAATTTTA 62918 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 62984 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 63050 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 63114 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //