Array 1 90932-92424 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIE01000033.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N46825 N46825_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90932 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 90993 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 91054 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 91115 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 91176 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 91237 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 91298 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 91359 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 91420 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 91481 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 91542 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 91603 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 91664 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 91725 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 91786 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 91847 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 91909 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 91970 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 92031 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 92092 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 92153 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 92214 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 92275 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 92336 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 92397 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 108557-110338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIE01000033.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N46825 N46825_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108557 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108618 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108679 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108740 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 108801 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 108863 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 108924 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 108985 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 109046 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 109107 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 109168 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 109229 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 109290 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 109351 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 109412 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 109473 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 109534 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 109595 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 109657 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 109718 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [109760] 109760 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 109821 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 109882 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 109943 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 110004 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 110065 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 110126 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 110187 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 110248 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 110309 29 96.6 0 A............................ | A [110335] ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //