Array 1 44881-46495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBA010000005.1 Salmonella enterica strain 122 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44881 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44942 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 45003 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45064 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45125 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45186 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45247 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45308 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45369 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45430 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45491 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45552 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45613 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45674 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45735 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45796 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45857 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 45918 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45980 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46041 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46102 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46163 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46224 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46285 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46346 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46407 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46468 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62628-64104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBA010000005.1 Salmonella enterica strain 122 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62628 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62689 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62751 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62812 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 62873 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 62934 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 62995 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63056 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63117 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63178 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63239 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63300 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63361 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63423 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63526 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63587 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63648 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63709 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63770 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63831 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63892 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63953 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64075 29 96.6 0 A............................ | A [64101] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //