Array 1 942022-943452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045955.1 Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010528 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 942022 29 100.0 32 ............................. GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG 942083 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 942144 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 942205 29 100.0 32 ............................. CCGCTTGAGTGGGCTGGTGGTGGGAAACTACA 942266 29 100.0 32 ............................. CGCCCTGTAGTTATTTCATACCGCTTTAGAAG 942327 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 942388 29 100.0 32 ............................. CCTCCTGCTCAGGTGCCGAGAATTGAGGGCGC 942449 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 942510 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 942571 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 942632 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 942693 29 100.0 32 ............................. GTACCTGTCAGTTTAGCTTCAGCGATGAAAAG 942754 29 100.0 32 ............................. TCACAGCAAACAATTTTGGACGTGTGTTGCGG 942815 29 100.0 32 ............................. CGGGCGCCAGTTCTTTTTGTTGCCTACCGGCT 942876 29 100.0 32 ............................. GCTGAGGGGATGGCGCTTAAAGACTGGCAGCA 942937 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 942998 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 943059 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 943120 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 943181 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 943242 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 943303 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 943364 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 943425 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 959720-960176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045955.1 Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010528 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959720 29 100.0 32 ............................. CGCTCGCCAATACGCGGAAAACTGTCAGCGTA 959781 29 100.0 32 ............................. AGCCAGAAAGTCACAAATGCGAGGAGTCAGCC 959842 29 100.0 32 ............................. GAACGACAATAAAGCATGTGGCAATTGCGCCG 959903 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 959964 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 960025 29 100.0 32 ............................. GCGTATCCCGAAATCACGTTCAAGAAAAATCC 960086 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 960147 29 96.6 0 ............T................ | A [960174] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //