Array 1 72773-78381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIVA010000018.1 Xanthomonas campestris strain Xcv DC 91-1 Contig_20_220.965, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72773 28 100.0 32 ............................ TTGACGCTGCGATCGACCATGCGGTGCAGTTT 72833 28 100.0 32 ............................ GAATTGGCCTTGAGGCCGATTTCATCGACCAG 72893 28 100.0 32 ............................ TCGCTGAACTTCCATTCAAGTTGCACGGGCTC 72953 28 100.0 32 ............................ TTGCGGCCGAGGAGAGCATTCCGGGGTGGGAG 73013 28 96.4 32 .................T.......... ATCAGCATGTCATTCAGGTCTGCGGCCTGCAC 73073 28 100.0 32 ............................ GCCAAGGCCGCTGCTGCCAGCTTCCGCGGCCC 73133 28 100.0 32 ............................ CAGGGTTTTTTGAATCAAAACCTGGCGCCTCG 73193 28 100.0 32 ............................ ACAGCCGACGCAAAGTTTCGGCCGATCACCAT 73253 28 100.0 32 ............................ CCCGCCGCCGTTTCCTGGCCCGCGTTCTGCAC 73313 28 100.0 32 ............................ AGCACAGCAAGCCTTACACCGTGGCCGCGATC 73373 28 100.0 32 ............................ AGGAAATGCATAGCGCTCGCGGCGCACATACC 73433 28 100.0 32 ............................ TATACGAAGAAGCCGGTGGGCTGCCTTGCAGC 73493 28 100.0 32 ............................ TACACCACGAAACAGGAATGCCCGATGCCGCA 73553 28 100.0 32 ............................ CCAGAGTGGAAGCGGATGCGCATGCCATTGGT 73613 28 100.0 32 ............................ ATCAGCCTTCTCACGCACGACGTAGGTCAACA 73673 28 100.0 32 ............................ GACACGGTAGCCGTTGTGCTGGTGGTGCTGGC 73733 28 100.0 32 ............................ GCACAGCAGTACGTGCATGCGTTCGTGACGGC 73793 28 100.0 32 ............................ ATTCGCCGGCCACCCACTGGCGCAAGTTTTCA 73853 28 100.0 32 ............................ TAGGCCGCCTCGACGATAACGGCGATGAGATT 73913 28 100.0 32 ............................ ACTGGCGAACGTGTGACGCACAGGGCCGTGCC 73973 28 100.0 32 ............................ ATCGGCCAATGCGGTTTTACATGCGTCGGCGT 74033 28 100.0 32 ............................ CGCAGCGCGACGAGCTGCCGCAGGCGTCAGGC 74093 28 100.0 32 ............................ ATGAGCAGCACGATGCCAATGGCCGCGAACAG 74153 28 100.0 32 ............................ CCAGGCGACAGAGGATGCCTGTGCGCTGGTTA 74213 28 100.0 32 ............................ GAGAAGGACGGTGGCGGCTATGCGAGGCACTC 74273 28 100.0 32 ............................ ATTCGCCGTAGCGCAGGTCCGGGCCGGCATAC 74333 28 100.0 32 ............................ TGACGTGGCAGCAACGTGCGTCATGGCGCTGA 74393 28 100.0 32 ............................ AACTTCGTCCTCGCATGGGCGGATACTTCCAT 74453 28 100.0 32 ............................ AGCAACCATGCCAGGTCTTGCCAACGTTTCAG 74513 28 100.0 32 ............................ TGGATCCGTCAGGCTTCCGGAACCCGAAAAGC 74573 28 100.0 32 ............................ AGCGCAACGCCGAACAGCTCGACCTCCTGGAA 74633 28 100.0 32 ............................ GGCGAGGGCATCGGCCGCGAGGCGCATGCCGC 74693 28 100.0 32 ............................ TCCCGCCGCTGCCGGCTCTGTTGTGCCGGCAA 74753 28 100.0 32 ............................ GATCGGCTGATGTGGCCACGGCTACACGCAAC 74813 28 100.0 32 ............................ TGCGGCGCAATGCCAACGATGTAAAGCCAAGT 74873 28 100.0 32 ............................ TCATCTCATCGAAGCGGTTGCGCAGGTTGATG 74933 28 100.0 32 ............................ ATTATTGGCTGGAGTAGCTTGGGGGGATGCGA 74993 28 100.0 32 ............................ GCTGGGAGGGCGCCGAGACAGCCGAGCAGCGG 75053 28 100.0 32 ............................ GCGAAGGCGGCATCCAGCCGGTCCAGTTCATC 75113 28 100.0 32 ............................ AGCGAGGCGGCCATTGTCGTGCCCGAGGAAAC 75173 28 100.0 32 ............................ TGGCCGAGGCGGCGCGAAACCCGGACATCTGC 75233 28 100.0 32 ............................ ACCAGCTCGTCCAGAATGCGAACCGCCATAGC 75293 28 100.0 32 ............................ ACAGGCACTCCGCGACGGCGTGTCCATACCAG 75353 28 100.0 32 ............................ TGATTGACCGGAGAGAAGTCGGGCAACTTCAG 75413 28 100.0 32 ............................ TTAACCCGTCGCATGTCGGCCTGGATGAGATC 75473 28 100.0 32 ............................ AACACGTGGCTGGCGCCCATCGTTCGTGGAGC 75533 28 100.0 32 ............................ ATATAGGTCCGGGTCGATCACCTTGATGATGG 75593 28 100.0 32 ............................ TGCAGATCAATCGGATCCTCGGCCACGAGGGC 75653 28 100.0 33 ............................ AGGTCGTAACGCGTTTGCGCAGACATCCATTCC 75714 28 100.0 32 ............................ AACCCGACACGCAACCTGAGGCGGTGAGCACC 75774 28 100.0 32 ............................ AGTAGCGTGCGTGGCCGGCCGAAGTGCTCGAG 75834 28 100.0 32 ............................ AGGTCGTCCTGCAGAGCATCGCCCGCAGGGAA 75894 28 100.0 32 ............................ TAGCATGTCCAGCAGCTGCGCGTGCATGCGCT 75954 28 100.0 32 ............................ ACTGCAAAACAGGCAGCCTGACGCATCGCTGC 76014 28 96.4 32 ............A............... TTACGCGCCTTGCGCTTCTCCCGCTCGGTCTC 76074 28 100.0 32 ............................ ATGGCTCAGACCCCCAGACCAGCGTGGAACAC 76134 28 100.0 32 ............................ AGCCGCGGGAAGGCGCCCACTGGCACGAAGGG 76194 28 100.0 32 ............................ ATCCCGCTCGACGAGATGCCAGAGCCGGACGG 76254 28 100.0 32 ............................ CGGAATATCTCCGTGCGCTTATTGAGCAGTTC 76314 28 100.0 32 ............................ TGCCGCCGAACGCGCGCAGCAGCTCTATTGCG 76374 28 100.0 32 ............................ GTTGCGCCACACGGGAATCGGCGATGCGATGT 76434 28 100.0 32 ............................ GGCGACATCCTCGCGGTCATGCAGCACGCCTA 76494 28 100.0 32 ............................ ACGATTCCCGGCGCAATCTCGCCGGACTTGAT 76554 28 100.0 32 ............................ TACGCAGAATGGCTTAGCGACTTGCGTAGCGA 76614 28 100.0 32 ............................ TACCGGACTGGCGAAATGTGCATTGCGCTCGC 76674 28 100.0 32 ............................ AGCCGGTGCGTTGATGCTGATCTGAAACCTCT 76734 28 100.0 32 ............................ TTAGTGAAAACGTGCACGTACGTGCCATCGGC 76794 28 100.0 32 ............................ GACCTGACGCCGATTCCAAACCAGAAGGGCAC 76854 28 96.4 32 ..........C................. TGCTGGCGGGAGTCATGCCGAACTCGGACATC 76914 28 100.0 32 ............................ TAGCTGTGTAACTGCTGCATCGGTGAGACCTG 76974 28 100.0 32 ............................ AGGTTGCCAAGCGGGTGAGGTTCTGTGCGATC 77034 28 100.0 32 ............................ ACCGGCCCAGGTCGTTTGCCCCATGCCGGCGA 77094 28 100.0 32 ............................ TGGCGGATCTCCTCGGTGGTCTGGTCGATCGC 77154 28 100.0 32 ............................ AACGACGGGCCGGTCGAGTTCCACCTCGAGCA 77214 28 100.0 32 ............................ TCATTGCGCCAGACCGCCGCCTCATGCACCGC 77274 28 100.0 32 ............................ TAGTCATGTTCCAAAGCGACAACCCAGAGGGG 77334 28 100.0 32 ............................ GCCTACAGCCGCGCATTGTCGGGTAGCGTCAA 77394 28 100.0 32 ............................ ACTACGGCCGCACCTTCGGTAGCGCTGTTCTC 77454 28 100.0 32 ............................ TTGGCGCAGAACACCGCCGCGGTGCAGGTAGA 77514 28 100.0 32 ............................ GCCTAAGTGCATGGCCATTGATCGCTACGATC 77574 28 100.0 32 ............................ CCGCGCCAACAGGCTGCGGGGCAGGATGGTAG 77634 28 100.0 32 ............................ GACATGATCCGCCAGAAGCTCTCCGGAGCCAT 77694 28 100.0 32 ............................ TACGCCAAGTGCTACTTGGCAGGCCTGCGCCC 77754 28 100.0 32 ............................ TAGGTCGTCGGCGACCAGGCCACCGTTGAACA 77814 28 100.0 32 ............................ GCGAAGCGGATGCGCACCGACTGGAAGGCTTG 77874 28 100.0 32 ............................ TGGCGTGGCTGTGCAAGCAGCTGTACTGGTAC 77934 28 100.0 32 ............................ AAACGCCAAGTCCGCACATAGTCACCTTCCAG 77994 28 100.0 32 ............................ CACGACCGGATTCGCGGCCCACGCTCCCACTC 78054 28 100.0 32 ............................ ATACAGCACAGAGTGCCTCCGTGCGCCTTGTC 78114 28 92.9 33 ....G.C..................... AATTGGACCAGGCACAAGCACGCATTTCTGCGC 78175 28 100.0 32 ............................ AGGAGCGCAAGGGTGTCGAGCTCACTGGCGCA 78235 28 100.0 32 ............................ AGGGCATTGAACAGGTCGCCGAACCCATCGAT 78295 28 96.4 30 ......................G..... TCGTTCCGCACGGGTACCGCATGCATCGCA G [78321] 78354 28 82.1 0 ....G.......AC......T..T.... | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCGCGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACATTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGTCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCGAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : AAAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACCACTCACTGCTGTGGAGGCTGTCCAGATAGAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGTGGCGGGCTTATCTGCGGATTCAGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACGCGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTACCGTAGACCGCAGGTGCATCGACCAGTCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //