Array 1 141280-140501 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEDI01000076.1 Escherichia coli isolate JHI_5002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 141279 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 141218 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 141157 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 141096 29 100.0 50 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAGGTGTTCCCCGGCGAGTAA 141017 29 100.0 32 ............................. CCGCCGTTATATGGAAAGATTCCGGTTTGGTA 140956 29 96.6 32 ..........T.................. ATGATCCGCGTGCGACCCTCGTTATAGTCTGC 140895 29 100.0 32 ............................. GTAAAAAATATGATTGATTTAAAGCGGGTGCC 140834 29 100.0 32 ............................. CAATTGGCGGAATACAGGACGGGTGGATATTC 140773 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 140712 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 140651 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 140590 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA 140529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 13 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGTCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157908-156781 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEDI01000076.1 Escherichia coli isolate JHI_5002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157907 29 100.0 32 ............................. AATTACAACTGGGATTCATTGCAAATCAGGAA 157846 29 100.0 32 ............................. AAACAGGCCGGAGATCAGTTTAATACGCTGAT 157785 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 157724 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 157663 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 157602 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 157541 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 157480 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 157419 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 157358 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 157297 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 157236 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 157175 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 157114 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 157053 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 156992 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 156931 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 156870 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 156809 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //