Array 1 345208-344163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072335.1 Prevotella nigrescens strain F0630 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 345207 47 100.0 29 ............................................... TGCTGACGCTTTTATTTGTGCCTGTTGAG 345131 47 100.0 30 ............................................... TTTCCCCTTGAGTGTGTTGTAAATGAGTTT 345054 47 97.9 30 ......................C........................ ACTAAGATAAACAAGGACTCACAAAAGAAA 344977 47 100.0 29 ............................................... GATGGCTTAAATTGTTCGGCTTTTGTATT 344901 47 100.0 30 ............................................... AAACAAAAAAAACATGAAAAAATTTTTTAA 344824 47 100.0 29 ............................................... CTATCATCGTTTGAACGCTATTTAAAGGG 344748 47 100.0 30 ............................................... GACAATAAAAGACTACAGTAGCTAAATGCA 344671 47 100.0 30 ............................................... AGTACTTATTCGGTGGCGACCTTATCGACA 344594 47 100.0 30 ............................................... TCAAGTGCGAGGCTATCGACGGCACTGACC 344517 47 100.0 30 ............................................... TACTCTGTAATTTCTACACAACAAAAGACT 344440 47 100.0 30 ............................................... ACATAAAGGCGACCTGCAGATTGTATGGGA 344363 47 100.0 30 ............................................... AAATAGTATGGCAAACAAGCATCTATCAGA 344286 47 100.0 30 ............................................... AGCCTCACCATTACTATAGAAAAATGGAAT 344209 47 97.9 0 ................T.............................. | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.7 30 GCTGTGTCTGCTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : CTTGGCCAATACACCGGATATTTGTTCCGGAGACCATTGCTCGGTAACAAGAAGATGCCTTGCCTCTTCCATGACATCCTTGTTGATTGAATGATTGCCTGGCTTTCTGCGCTTTGTCTGTACTGCATTTGCCTGGGCTGTTTCCCAATTATAGCGTCCTCTGACTCCACTATTACGTCTTATTTCACGAGACACTGTACTTGGACTTACATTTATCGCTTTGGCAATCTCTTTTTGTTTCGTTCTATTTTGGAGTAGTACAGAAATTGTGTACCTTTGCTCCGAGGTTAATTGTTTGTACATTGCAATGCAAAATTAATTAATCTTGGGGAGACAGAGGTCTCCTTTTTTATTTTTATGCATTGCTTGTTGATTTTCCACTCATGGGAGCTGCTCGCCCCCAAACCCCTCGGTGTTTTCAGGTATAGATTATTAAGCTAAACCTACACTTGGGATTGCAGTTCTATGTTGAACTTGCGTCTGCATAACAAAACCGCTAT # Right flank : GCGACATATTGTTTCTAATGACCACCATTAGAAAATAATTTTGGGAAACGGATGTTATTCAATAACTTACATCATTAACCACAGGTAAGTATTCCCAATGACCGGTTTGGGTTTAAGACAGCACCCTAAACTTATCCCGAACTGGCGTAGATAGTAAAAATCGCCTTGGTTTTATAAAAATAATTCTGACAGAAAACGATAATTTCGATTTGGCATTGCGAAAGCGGCTGTTTTGCACGGTAAAAGCATAGGTTTTACGTTGCAAAACAGCCGCTTTTGGAATGCAAAACAATAGGTTTCATAATACATTGATAACAAGACTGTTAAGCAATCTCTATTCTTTTGAAAAATATTTACACTTATTTACCGTCAGATGCACGCAACCGAAGCTGTTTTAACAGGCTGTTCAGTGCTGTCCAAACATCTTGTTGGTTGAGCTATTCTTTCAGCAATTGCTCGGCAACAGCTTCCAGTTCGGCATACCATTCTTCGCCAAAGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGTCTGCTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 346390-350279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072335.1 Prevotella nigrescens strain F0630 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 346390 47 100.0 30 ............................................... AGCTAGACAAAATGGAAAATTTAATGATGT 346467 47 100.0 29 ............................................... ACATAAACCGATTTATAAAAATCATTGAA 346543 47 100.0 30 ............................................... CGGCAAAGAGACTAAGATGGGGCGTACAGA 346620 47 100.0 29 ............................................... TACTTCAAAACGAGGAGTAAAGAAGCGTT 346696 47 100.0 29 ............................................... AAGTATAGGAATTGTTCTTTTATCATTGT 346772 47 100.0 29 ............................................... ACGTGAGACTGAAGGATATATTTAAAGAC 346848 47 100.0 30 ............................................... TGCAAGTATGGGCATAAAAATAAGCCCATT 346925 47 100.0 30 ............................................... GCACAACCCAGCACACGAAGATACCGACAT 347002 47 100.0 29 ............................................... CGGCTCGAAAGGTCATAACCGTTCCGGCT 347078 47 100.0 30 ............................................... CTGTCTGCAGAACCGATAATTTGTATATAT 347155 47 100.0 29 ............................................... TTTCGGGAATAAAACTATCTATCGATGTG 347231 47 100.0 30 ............................................... ACGATTAGGATAAAAATTCACCTCAAAACC 347308 47 100.0 30 ............................................... ACATACGTAAAAGTGCCCTCAAGCGGGAGA 347385 47 100.0 30 ............................................... CTTATCACAAACTACCGAATCCTTCGAGTG 347462 47 100.0 30 ............................................... TTCCATAGCTATTAAATATATACTTTAGCT 347539 47 100.0 30 ............................................... TTTTTGCCAATGCATCGTAATACTGCTTTT 347616 47 100.0 30 ............................................... AAATTCGTGGGTGGCATATTGCCCAAAAAA 347693 47 100.0 30 ............................................... ATCGTACTTTGCATCGACGTTGGATTCTTC 347770 47 100.0 30 ............................................... ACATTCCTCTTTTAGATTGCGATAGTATTC 347847 47 100.0 30 ............................................... TTTTACTGTTGCCATTGCGTTTTGTTTTTT 347924 47 100.0 30 ............................................... ATTTCTTCTAATGTTTTCATTTCAAATACA 348001 47 100.0 30 ............................................... GTCATGTTGCGGGTAAGGTCTGCCGTCGGC 348078 47 100.0 30 ............................................... TATACATCCTGCAGACAACGTTGCGATATT 348155 47 100.0 30 ............................................... TGTTAGGGTTGTATGCACGGCATCTTTTCT 348232 47 100.0 30 ............................................... ATCCAAAAGGATAATATGAGTGAAAATACG 348309 47 100.0 30 ............................................... TCTGTTGTTTTGATGTTTTCATAACCGATA 348386 47 100.0 29 ............................................... ATTGAAATGACGATAGGGCGAGAGCCTAC 348462 47 100.0 30 ............................................... AAGACAAACTGTATATAGATGGCTGCAAGG 348539 47 100.0 30 ............................................... AGAAGAAGTTCTTATCAATTACGAGGCAGT 348616 47 100.0 30 ............................................... GAGACGAGGTGTCCTTTACAAATAAAGTAG 348693 47 100.0 30 ............................................... CCTGCTGTGAAGCGAGACCGTATTGCTGAC 348770 47 100.0 29 ............................................... CTATTGAATACTATTATTATTACTTCACC 348846 47 100.0 30 ............................................... CTAATAACTCTTTTAGAGTATATATGCCCC 348923 47 100.0 30 ............................................... GCGTGGATAGAGAGTAACAACGGCGGTATG 349000 47 100.0 30 ............................................... CATATATAACATAATACCTGCAGCAAGGGT 349077 47 100.0 30 ............................................... GTATAACTCAACGCTCCGAACGTTCTTACT 349154 47 100.0 30 ............................................... TGAACAAAGAACGAATAGAAATGGCTATCT 349231 47 100.0 30 ............................................... CTGGCATTCGTTTTCAGCTCTGCCATTCGT 349308 47 100.0 30 ............................................... AACATTCGGATTTTACCCTTATTTTTCGCC 349385 47 100.0 30 ............................................... GAATGCTGACAGGAAGCAGACAACAGTATG 349462 47 100.0 30 ............................................... CAATATTTCTTTCCGAATTATGCCAAATAT 349539 47 100.0 30 ............................................... AGAAGATGACACCTTGACACGCTCTGATGA 349616 47 100.0 30 ............................................... AGCAACTTGCAACTGTTCAACTGCGAGCCT 349693 47 100.0 30 ............................................... CTTTTTAGCATCATCGGAAAGCTCGTTGTA 349770 47 100.0 30 ............................................... AGGGACTCCTTTCCAATGATAGTTCCACTT 349847 47 100.0 30 ............................................... GAAAGTGTCTTCATGTCGCTATCGAAATCT 349924 47 100.0 31 ............................................... ACTTCACTACCATTCATAAGCAAGCCCCTGG 350002 47 100.0 30 ............................................... ATATCGCCACAAGTTGATTATGATGCACGT 350079 47 100.0 30 ............................................... GTGTAGTTGCTGTTGTTTGCGTGTTTGGAT 350156 47 100.0 30 ............................................... TGAAAAACATACGACGAAAAGATATAAGTA 350233 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 51 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Left flank : AAAACGCTTTGGGGACTTCGAGATGGACACGATTGTTGGAAGAGGAAACCATGGGGCCATCGTGACACTGATAGAGCGCAGTACAAGTATGCTGTTTATGAGAAAACTCAAAAAGGGGAAAAATGCCAAAGAGCTGGCACGTACTGTAATACATTTGCTGTCTCCATTCAAAGAGCATGTCAAGTCTATTACAACTGACAACGGTACTGAATTCGCTTGTCATGAAATGATAGGCAAAAGCCTTGGTGTCACCATCTATTTTGCTGACCCATACGCTTCATGGCAGAAAGGGGCCATAGAAAATGCAAACGGACTGATTAGGCAATACGTGCCAAAAACAGAAACGTTTGAACATGTCAGCCATCAACAAATCACAAAGTATTCAAAGAAAATTAACATGAGACCAAGAAAGAAATTAGAATTTAAAACACCGCATGAGTGCTTTTACGAACAAATTAAGTAAATTTGCACTTGCTTGTTGAATTCACGAGAAAACATTT # Right flank : CACAAATAGCCTAATATGGTGATATCCAGCGATTTTACGAAGGCTTAGAGAAAAAGAAAAATGCAAGAAAGAATAAAGTCCCACTCGGTAAGAATGGGACTTTATTCTTTCAATAACGATATCCAGCTTTATAAATAGTAACCACTTTAATGATATAAAAATAAACAAAAAAGAGTACCCTAAAACGTTAGTTTCAATGCACTCTTATTTTTCTTATCCTTAAGTTTTATAACTTTAATCTCTGTATGCAGACATAAAAGAAAGAATAATCTTTTAAGTGGTTGCTGCAAAACAAGTAAGATACTTTCTCATTGCTCCACTATATATTGCAAGTTAATTATTTTTTGGGTCCTTTATAATAGGGATCGAATTCTATGACTATGGTTGTTTTCTCTTTGACAGGGCGACCGTTCTTTAATGCAGGCGTCCATAGTGGCATGTGTTCTACCAACCGAATGGCTTCCTTTCGGAAATGTTCTGTGGCAGCTGCCAATACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //