Array 1 913-623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRZ01000107.1 Clostridium botulinum D str. CCUG 7971 p2Cb7971_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 912 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 847 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 782 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 717 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 651 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGCAAAAATGATTGAATAATTTTACAGTTAGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 5785-4693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRZ01000050.1 Clostridium botulinum D str. CCUG 7971 Contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5784 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 5718 36 100.0 30 .................................... TTAGCAGAAACTATACTAATGAACATATGT 5652 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 5586 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 5520 36 100.0 30 .................................... AGTACTAAAGATGCTAAATCAAGAATAAGG 5454 36 100.0 30 .................................... ATTGTAGCAGATAGTGCTGAACCTAGAACA 5388 36 100.0 30 .................................... AGCTACAAAATAGGGTGTACCAAAAGGGGT 5322 36 100.0 30 .................................... GTTCTTATAGGAGATTCTTCAGCACTATAT 5256 36 100.0 30 .................................... GTAAAGATGGGTTTAGAAATGAGTGTAAAT 5190 36 100.0 30 .................................... TATTACATTAAAGCAACTGCAACTGTTACA 5124 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 5058 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 4992 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 4926 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 4860 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 4794 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 4728 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : ATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //