Array 1 219139-218631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSR01000001.1 Pseudomonas aeruginosa strain PhDW6 IPC880_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 219138 28 100.0 32 ............................ TCTTCGCAATGTGCCCATAGGTCCATGTGGGC 219078 28 100.0 32 ............................ TTGCCCAGGCGCTAGGAATATCCACCGACGAA 219018 28 100.0 32 ............................ TTGATCGCCGGATGATCCGCCTTGAACTCACG 218958 28 100.0 32 ............................ ACGTATCCCGAGCGCGAACGCGGCTTGTGCAT 218898 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 218838 28 100.0 32 ............................ AACGCAACGACCGGCTCTACGGGCGCCGACGG 218778 28 100.0 32 ............................ CGCAGGAAAATTTGCTAGCACTTTTCGACCTG 218718 28 100.0 32 ............................ ATTGCGCTCAGCGCGAAGAACCACAGAGTGAA 218658 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTMGCATCGCCCATKACAYGACCTTTCGCGCRCGAACGGCYKGSRTSARCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGRAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCYGGAAAAACTCGGTATTTCRTTTTCCTTCAAATGGTTATAGGTTTTCGGYGCTW # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGTATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGCGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGTTCTGTACGTGTGAGCTCATCCTCTAAATGGACATACCAAACCCATACAAATCAGCAGCTTGAGATTTTTTGTCCATTGTCCATTTTTTCCCAGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11987-13511 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSR01000038.1 Pseudomonas aeruginosa strain PhDW6 IPC880_38.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11987 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 12047 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 12107 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 12167 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 12227 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 12287 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 12347 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 12407 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 12467 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 12527 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 12587 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 12647 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 12708 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 12768 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 12828 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 12888 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 12948 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 13008 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 13064 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 13124 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 13184 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 13244 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 13304 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 13364 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 13424 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 13484 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23675-22386 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSR01000038.1 Pseudomonas aeruginosa strain PhDW6 IPC880_38.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23674 28 100.0 32 ............................ GCCGGGCGGCCCCTGATCACCAGCCACAACGA 23614 28 100.0 32 ............................ GGACGAATGGCAGCATGCCGCAGCAAGTTATC 23554 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 23494 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 23434 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 23374 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 23314 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 23254 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 23194 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 23134 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 23074 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 23014 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22954 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22894 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22834 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 22774 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22714 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22654 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22594 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22534 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 22474 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 22413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //